Literature DB >> 29933903

The use of metabarcoding for meiofauna ecological patterns assessment.

Laiza Cabral de Faria1, Maikon Di Domenico2, Sónia C S Andrade3, Monique Cristina Dos Santos4, Gustavo Fonseca5, Joana Zanol6, A Cecilia Z Amaral7.   

Abstract

Marine meiofauna comprises up to 22 phyla. Its morphological identification requires time and taxonomists' expertise, and molecular tools can make this task faster. We aim to disentangle meiofaunal diversity patterns at Araçá Bay by applying a model selection approach and estimating the effectiveness of metabarcoding (18S rDNA) and morphological methods for estimating the response of meiofauna diversity in small-scale interactions with environmental variables. A rarefaction curve indicated that ten samples were sufficient for estimating the total number of meiofauna OTUs in a tidal flat. In both approaches, richness was predicted by mean sand percentage, sediment sorting, and bacteria concentration. Nematode genera composition differed significantly between approaches, the result of taxonomic mismatch in the genetic database. The similarity between the model selected for diversity descriptors, the richness of nematode genera and meiofauna composition emphasized the utility of predictive models for metabarcoding estimates to detect small-scale interactions of these organisms.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  Araçá Bay; Benthic ecology; Coastal zone; Community composition; Sediments; São Sebastião channel

Mesh:

Year:  2018        PMID: 29933903     DOI: 10.1016/j.marenvres.2018.06.013

Source DB:  PubMed          Journal:  Mar Environ Res        ISSN: 0141-1136            Impact factor:   3.130


  3 in total

1.  Human access impacts biodiversity of microscopic animals in sandy beaches.

Authors:  Alejandro Martínez; Ester M Eckert; Tom Artois; Giovanni Careddu; Marco Casu; Marco Curini-Galletti; Vittorio Gazale; Stefan Gobert; Viatcheslav N Ivanenko; Ulf Jondelius; Marinella Marzano; Graziano Pesole; Aldo Zanello; M Antonio Todaro; Diego Fontaneto
Journal:  Commun Biol       Date:  2020-04-20

2.  Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA.

Authors:  Angelo F Bernardino; Fabiano S Pais; Louisi S Oliveira; Fabricio A Gabriel; Tiago O Ferreira; Hermano M Queiroz; Ana Carolina A Mazzuco
Journal:  PeerJ       Date:  2019-11-07       Impact factor: 2.984

3.  Grab what you can-an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding.

Authors:  Jon T Hestetun; Anders Lanzén; Thomas G Dahlgren
Journal:  PeerJ       Date:  2021-06-21       Impact factor: 2.984

  3 in total

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