Literature DB >> 29933431

Learned protein embeddings for machine learning.

Kevin K Yang, Zachary Wu, Claire N Bedbrook, Frances H Arnold.   

Abstract

Year:  2018        PMID： 29933431      PMCID： PMC6247922          DOI： 10.1093/bioinformatics/bty455

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  6 in total

1.  Machine learning-assisted directed protein evolution with combinatorial libraries.

Authors:  Zachary Wu; S B Jennifer Kan; Russell D Lewis; Bruce J Wittmann; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-12       Impact factor: 11.205

Review 2.  Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies.

Authors:  Rahmad Akbar; Habib Bashour; Puneet Rawat; Philippe A Robert; Eva Smorodina; Tudor-Stefan Cotet; Karine Flem-Karlsen; Robert Frank; Brij Bhushan Mehta; Mai Ha Vu; Talip Zengin; Jose Gutierrez-Marcos; Fridtjof Lund-Johansen; Jan Terje Andersen; Victor Greiff
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

3.  Learning the protein language: Evolution, structure, and function.

Authors:  Tristan Bepler; Bonnie Berger
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

4.  Artificial Intelligence Pipeline to Bridge the Gap between Bench Researchers and Clinical Researchers in Precision Medicine.

Authors:  Lewis J Frey; Douglas A Talbert
Journal:  Med One       Date:  2020-01-10

5.  Antibody design using LSTM based deep generative model from phage display library for affinity maturation.

Authors:  Koichiro Saka; Taro Kakuzaki; Shoichi Metsugi; Daiki Kashiwagi; Kenji Yoshida; Manabu Wada; Hiroyuki Tsunoda; Reiji Teramoto
Journal:  Sci Rep       Date:  2021-03-12       Impact factor: 4.379

6.  Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution.

Authors:  Rhondene Wint; Asaf Salamov; Igor V Grigoriev
Journal:  Mol Biol Evol       Date:  2022-02-03       Impact factor: 16.240
  6 in total

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