Literature DB >> 29932055

Dosage effects in morphogenetic gradients of transcription factors: insights from a simple mathematical model.

Reiner A Veitia1.   

Abstract

The classical Hill equation is the simplest way to model sharp transcriptional responses (TR) to changing concentrations of a regulator. Such steep sigmoidal transitions of the TR are often involved in the creation of boundaries or domains during development. Here, I use the Hill function to explore the response of a promoter to a gradient of a transcription factor (TF). Specifically, I examine how various sources of nonlinearity (such as that imposed by the number of TF-binding sites) and the nonlinearity of the gradient itself influence TR and modulate its robustness to variations in the dosage of morphogen. This qualitative analysis underscores how nonlinearities can modulate the robustness of TR and is a convenient way to convey concepts in a teaching setting.

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Year:  2018        PMID: 29932055

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  16 in total

1.  Nonlinear developmental processes as sources of dominance.

Authors:  M A Gilchrist; H F Nijhout
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

Review 2.  A sigmoidal transcriptional response: cooperativity, synergy and dosage effects.

Authors:  Reiner A Veitia
Journal:  Biol Rev Camb Philos Soc       Date:  2003-02

3.  Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila.

Authors:  Danielle Lebrecht; Marisa Foehr; Eric Smith; Francisco J P Lopes; Carlos E Vanario-Alonso; John Reinitz; David S Burz; Steven D Hanes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-06       Impact factor: 11.205

4.  Morphogens: precise outputs from a variable gradient.

Authors:  Gozde Yucel; Stephen Small
Journal:  Curr Biol       Date:  2006-01-10       Impact factor: 10.834

Review 5.  The enhanceosome and transcriptional synergy.

Authors:  M Carey
Journal:  Cell       Date:  1998-01-09       Impact factor: 41.582

6.  Model for the robust establishment of precise proportions in the early Drosophila embryo.

Authors:  Tinri Aegerter-Wilmsen; Christof M Aegerter; Ton Bisseling
Journal:  J Theor Biol       Date:  2005-01-01       Impact factor: 2.691

7.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

8.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

9.  Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster.

Authors:  Peter A Combs; Michael B Eisen
Journal:  F1000Res       Date:  2017-01-12

10.  Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos.

Authors:  Jonathan Desponds; Huy Tran; Teresa Ferraro; Tanguy Lucas; Carmina Perez Romero; Aurelien Guillou; Cecile Fradin; Mathieu Coppey; Nathalie Dostatni; Aleksandra M Walczak
Journal:  PLoS Comput Biol       Date:  2016-12-12       Impact factor: 4.475

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