Literature DB >> 29930335

A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds.

Tobias Koch1, Christiane Dahl2.   

Abstract

Dimethylsulfide (DMS) plays a globally significant role in carbon and sulfur cycling and impacts Earth's climate because its oxidation products serve as nuclei for cloud formation. While the initial steps of aerobic DMS degradation and the fate of its carbon atoms are reasonably well documented, oxidation of the contained sulfur is largely unexplored. Here, we identified a novel pathway of sulfur compound oxidation in the ubiquitously occurring DMS-degrader Hyphomicrobium denitrificans XT that links the oxidation of the volatile organosulfur compound with that of the inorganic sulfur compound thiosulfate. DMS is first transformed to methanethiol from which sulfide is released and fully oxidized to sulfate. Comparative proteomics indicated thiosulfate as an intermediate of this pathway and pointed at a heterodisulfide reductase (Hdr)-like system acting as a sulfur-oxidizing entity. Indeed, marker exchange mutagenesis of hdr-like genes disrupted the ability of H. denitrificans to metabolize DMS and also prevented formation of sulfate from thiosulfate provided as an additional electron source during chemoorganoheterotrophic growth. Complementation with the hdr-like genes under a constitutive promoter rescued the phenotype on thiosulfate as well as on DMS. The production of sulfate from an organosulfur precursor via the Hdr-like system is previously undocumented and provides a new shunt in the biogeochemical sulfur cycle. Furthermore, our findings fill a long-standing knowledge gap in microbial dissimilatory sulfur metabolism because the Hdr-like pathway is abundant not only in chemoheterotrophs, but also in a wide range of chemo- and photolithoautotrophic sulfur oxidizers acting as key players in global sulfur cycling.

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Year:  2018        PMID: 29930335      PMCID: PMC6155103          DOI: 10.1038/s41396-018-0209-7

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  46 in total

1.  Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  C G Friedrich; A Quentmeier; F Bardischewsky; D Rother; R Kraft; S Kostka; H Prinz
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

2.  Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.

Authors:  A Schäfer; A Tauch; W Jäger; J Kalinowski; G Thierbach; A Pühler
Journal:  Gene       Date:  1994-07-22       Impact factor: 3.688

3.  Growth kinetics of Hyphomicrobium and Thiobacillus spp. in mixed cultures degrading dimethyl sulfide and methanol.

Authors:  Alexander C Hayes; Steven N Liss; D Grant Allen
Journal:  Appl Environ Microbiol       Date:  2010-06-18       Impact factor: 4.792

4.  Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum.

Authors:  Christiane Dahl; Sabine Engels; Andrea S Pott-Sperling; Andrea Schulte; Johannes Sander; Yvonne Lübbe; Oliver Deuster; Daniel C Brune
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

5.  Construction of expression vectors for protein production in Gluconobacter oxydans.

Authors:  Verena Kallnik; Maria Meyer; Uwe Deppenmeier; Paul Schweiger
Journal:  J Biotechnol       Date:  2010-10-20       Impact factor: 3.307

6.  Thiosulfate dehydrogenase (TsdA) from Allochromatium vinosum: structural and functional insights into thiosulfate oxidation.

Authors:  José A Brito; Kevin Denkmann; Inês A C Pereira; Margarida Archer; Christiane Dahl
Journal:  J Biol Chem       Date:  2015-02-11       Impact factor: 5.157

Review 7.  Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere.

Authors:  Hendrik Schäfer; Natalia Myronova; Rich Boden
Journal:  J Exp Bot       Date:  2009-12-10       Impact factor: 6.992

8.  Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes.

Authors:  Alexander Loy; Stephan Duller; Christian Baranyi; Marc Mussmann; Jörg Ott; Itai Sharon; Oded Béjà; Denis Le Paslier; Christiane Dahl; Michael Wagner
Journal:  Environ Microbiol       Date:  2008-09-26       Impact factor: 5.491

9.  2016 update of the PRIDE database and its related tools.

Authors:  Juan Antonio Vizcaíno; Attila Csordas; Noemi del-Toro; José A Dianes; Johannes Griss; Ilias Lavidas; Gerhard Mayer; Yasset Perez-Riverol; Florian Reisinger; Tobias Ternent; Qing-Wei Xu; Rui Wang; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

10.  Methanethiol-dependent dimethylsulfide production in soil environments.

Authors:  Ornella Carrión; Jennifer Pratscher; Andrew R J Curson; Beth T Williams; Wayne G Rostant; J Colin Murrell; Jonathan D Todd
Journal:  ISME J       Date:  2017-08-01       Impact factor: 10.302

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  16 in total

1.  On the evolution and physiology of cable bacteria.

Authors:  Kasper U Kjeldsen; Lars Schreiber; Casper A Thorup; Thomas Boesen; Jesper T Bjerg; Tingting Yang; Morten S Dueholm; Steffen Larsen; Nils Risgaard-Petersen; Marta Nierychlo; Markus Schmid; Andreas Bøggild; Jack van de Vossenberg; Jeanine S Geelhoed; Filip J R Meysman; Michael Wagner; Per H Nielsen; Lars Peter Nielsen; Andreas Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

2.  The Heterotrophic Bacterium Cupriavidus pinatubonensis JMP134 Oxidizes Sulfide to Sulfate with Thiosulfate as a Key Intermediate.

Authors:  Yufeng Xin; Rui Gao; Feifei Cui; Chuanjuan Lü; Honglei Liu; Huaiwei Liu; Yongzhen Xia; Luying Xun
Journal:  Appl Environ Microbiol       Date:  2020-10-28       Impact factor: 4.792

3.  Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria.

Authors:  Tom Berben; Lex Overmars; Dimitry Y Sorokin; Gerard Muyzer
Journal:  Front Microbiol       Date:  2019-02-14       Impact factor: 5.640

4.  Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera.

Authors:  Tomohiro Watanabe; Hisaya Kojima; Kazuhiro Umezawa; Chiaki Hori; Taichi E Takasuka; Yukako Kato; Manabu Fukui
Journal:  Front Microbiol       Date:  2019-02-25       Impact factor: 5.640

5.  Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide.

Authors:  Zahra F Islam; Paul R F Cordero; Joanna Feng; Ya-Jou Chen; Sean K Bay; Thanavit Jirapanjawat; Roslyn M Gleadow; Carlo R Carere; Matthew B Stott; Eleonora Chiri; Chris Greening
Journal:  ISME J       Date:  2019-03-14       Impact factor: 10.302

6.  Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake.

Authors:  Charlotte D Vavourakis; Maliheh Mehrshad; Cherel Balkema; Rutger van Hall; Adrian-Ştefan Andrei; Rohit Ghai; Dimitry Y Sorokin; Gerard Muyzer
Journal:  BMC Biol       Date:  2019-08-22       Impact factor: 7.431

7.  The lysosomal transporter MFSD1 is essential for liver homeostasis and critically depends on its accessory subunit GLMP.

Authors:  David Massa López; Melanie Thelen; Felix Stahl; Christian Thiel; Arne Linhorst; Marc Sylvester; Irm Hermanns-Borgmeyer; Renate Lüllmann-Rauch; Winnie Eskild; Paul Saftig; Markus Damme
Journal:  Elife       Date:  2019-10-29       Impact factor: 8.140

8.  The biology of thermoacidophilic archaea from the order Sulfolobales.

Authors:  April M Lewis; Alejandra Recalde; Christopher Bräsen; James A Counts; Phillip Nussbaum; Jan Bost; Larissa Schocke; Lu Shen; Daniel J Willard; Tessa E F Quax; Eveline Peeters; Bettina Siebers; Sonja-Verena Albers; Robert M Kelly
Journal:  FEMS Microbiol Rev       Date:  2021-08-17       Impact factor: 16.408

9.  Lipoate-binding proteins and specific lipoate-protein ligases in microbial sulfur oxidation reveal an atpyical role for an old cofactor.

Authors:  Xinyun Cao; Tobias Koch; Lydia Steffens; Julia Finkensieper; Renate Zigann; John E Cronan; Christiane Dahl
Journal:  Elife       Date:  2018-07-13       Impact factor: 8.140

Review 10.  Sulfur Oxidation in the Acidophilic Autotrophic Acidithiobacillus spp.

Authors:  Rui Wang; Jian-Qiang Lin; Xiang-Mei Liu; Xin Pang; Cheng-Jia Zhang; Chun-Long Yang; Xue-Yan Gao; Chun-Mao Lin; Ya-Qing Li; Yang Li; Jian-Qun Lin; Lin-Xu Chen
Journal:  Front Microbiol       Date:  2019-01-10       Impact factor: 5.640

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