Literature DB >> 29928905

Chaos synchronization and Nelder-Mead search for parameter estimation in nonlinear pharmacological systems: Estimating tumor antigenicity in a model of immunotherapy.

Nikhil Pillai1, Morgan Craig2, Aristeidis Dokoumetzidis3, Sorell L Schwartz4, Robert Bies5, Immanuel Freedman6.   

Abstract

In mathematical pharmacology, models are constructed to confer a robust method for optimizing treatment. The predictive capability of pharmacological models depends heavily on the ability to track the system and to accurately determine parameters with reference to the sensitivity in projected outcomes. To closely track chaotic systems, one may choose to apply chaos synchronization. An advantageous byproduct of this methodology is the ability to quantify model parameters. In this paper, we illustrate the use of chaos synchronization combined with Nelder-Mead search to estimate parameters of the well-known Kirschner-Panetta model of IL-2 immunotherapy from noisy data. Chaos synchronization with Nelder-Mead search is shown to provide more accurate and reliable estimates than Nelder-Mead search based on an extended least squares (ELS) objective function. Our results underline the strength of this approach to parameter estimation and provide a broader framework of parameter identification for nonlinear models in pharmacology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chaos synchronization; Immunotherapy; Nonlinear models; Parameter estimation; Parameter identifiability

Mesh:

Year:  2018        PMID: 29928905      PMCID: PMC6263737          DOI: 10.1016/j.pbiomolbio.2018.06.006

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  16 in total

1.  Improved survival with vemurafenib in melanoma with BRAF V600E mutation.

Authors:  Paul B Chapman; Axel Hauschild; Caroline Robert; John B Haanen; Paolo Ascierto; James Larkin; Reinhard Dummer; Claus Garbe; Alessandro Testori; Michele Maio; David Hogg; Paul Lorigan; Celeste Lebbe; Thomas Jouary; Dirk Schadendorf; Antoni Ribas; Steven J O'Day; Jeffrey A Sosman; John M Kirkwood; Alexander M M Eggermont; Brigitte Dreno; Keith Nolop; Jiang Li; Betty Nelson; Jeannie Hou; Richard J Lee; Keith T Flaherty; Grant A McArthur
Journal:  N Engl J Med       Date:  2011-06-05       Impact factor: 91.245

2.  Synchronization-based estimation of all parameters of chaotic systems from time series.

Authors:  Debin Huang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-04

3.  Mixed immunotherapy and chemotherapy of tumors: modeling, applications and biological interpretations.

Authors:  L G de Pillis; W Gu; A E Radunskaya
Journal:  J Theor Biol       Date:  2005-09-08       Impact factor: 2.691

Review 4.  IL-2: the first effective immunotherapy for human cancer.

Authors:  Steven A Rosenberg
Journal:  J Immunol       Date:  2014-06-15       Impact factor: 5.422

5.  Extended least squares nonlinear regression: a possible solution to the "choice of weights" problem in analysis of individual pharmacokinetic data.

Authors:  C C Peck; S L Beal; L B Sheiner; A I Nichols
Journal:  J Pharmacokinet Biopharm       Date:  1984-10

6.  T model of growth and its application in systems of tumor-immune dynamics.

Authors:  Mohammad A Tabatabai; Wayne M Eby; Karan P Singh; Sejong Bae
Journal:  Math Biosci Eng       Date:  2013-06       Impact factor: 2.080

7.  Nonlinear dynamics of immunogenic tumors: parameter estimation and global bifurcation analysis.

Authors:  V A Kuznetsov; I A Makalkin; M A Taylor; A S Perelson
Journal:  Bull Math Biol       Date:  1994-03       Impact factor: 1.758

8.  Modeling immunotherapy of the tumor-immune interaction.

Authors:  D Kirschner; J C Panetta
Journal:  J Math Biol       Date:  1998-09       Impact factor: 2.259

9.  Predictive pharmacokinetic-pharmacodynamic modeling of tumor growth kinetics in xenograft models after administration of anticancer agents.

Authors:  Monica Simeoni; Paolo Magni; Cristiano Cammia; Giuseppe De Nicolao; Valter Croci; Enrico Pesenti; Massimiliano Germani; Italo Poggesi; Maurizio Rocchetti
Journal:  Cancer Res       Date:  2004-02-01       Impact factor: 12.701

10.  GenSSI: a software toolbox for structural identifiability analysis of biological models.

Authors:  Oana Chiş; Julio R Banga; Eva Balsa-Canto
Journal:  Bioinformatics       Date:  2011-07-22       Impact factor: 6.937

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  1 in total

1.  Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search.

Authors:  Nikhil Pillai; Sorell L Schwartz; Thang Ho; Aris Dokoumetzidis; Robert Bies; Immanuel Freedman
Journal:  J Pharmacokinet Pharmacodyn       Date:  2019-03-30       Impact factor: 2.745

  1 in total

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