Literature DB >> 29927722

Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes).

Ricardo Utsunomia1, Silvana Melo1, Priscilla Cardim Scacchetti1, Claudio Oliveira1, Milla de Andrade Machado2, Julio Cesar Pieczarka2, Cleusa Yoshiko Nagamachi2, Fausto Foresti1.   

Abstract

Microsatellites show great abundance in eukaryotic genomes, although distinct chromosomal distribution patterns might be observed, from small dispersed signals to strong clustered motifs. In Neotropical fishes, the chromosome mapping of distinct microsatellites was employed several times to uncover the origin and evolution of sex and supernumerary chromosomes, whereas a detailed comparative analysis considering different motifs at the chromosomal level is scarce. Here, we report the chromosomal location of several simple sequence repeats (SSRs) in distinct electric knife fishes showing variable diploid chromosome numbers to unveil the structural organization of several microsatellite motifs in distinct Gymnotus species. Our results showed that some SSRs are scattered throughout the genomes, whereas others are particularly clustered displaying intense genomic compartmentalization. Interestingly, the motifs CA, GA, and GAG exhibited a band-like pattern of hybridization, useful for the identification of homologous chromosomes. Finally, the colocalization of SSRs with multigene families is probably related to the association of microsatellites with gene spacers in this case.

Entities:  

Keywords:  SSR; cytogenetics; genome compartmentalization; neotropical fish; repetitive DNA

Mesh:

Year:  2018        PMID: 29927722     DOI: 10.1089/zeb.2018.1570

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  2 in total

1.  Chromosome Painting in Gymnotus carapo "Catalão" (Gymnotiformes, Teleostei): Dynamics of Chromosomal Rearrangements in Cryptic Species.

Authors:  Milla de Andrade Machado; Maelin da Silva; Eliana Feldberg; Patricia Caroline Mary O'Brien; Malcolm Andrew Ferguson-Smith; Julio Cesar Pieczarka; Cleusa Yoshiko Nagamachi
Journal:  Front Genet       Date:  2022-03-24       Impact factor: 4.599

2.  Non-random distribution of microsatellite motifs and (TTAGGG)n repeats in the monkey frog Pithecopus rusticus (Anura, Phyllomedusidae) karyotype.

Authors:  Julia R Ernetti; Camilla B Gazolla; Shirlei M Recco-Pimentel; Elaine M Luca; Daniel P Bruschi
Journal:  Genet Mol Biol       Date:  2020-01-13       Impact factor: 1.771

  2 in total

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