Literature DB >> 29925264

How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation.

Junhong Choi1,2, Rosslyn Grosely1, Arjun Prabhakar1,3, Christopher P Lapointe1, Jinfan Wang1, Joseph D Puglisi1.   

Abstract

Translation elongation is a highly coordinated, multistep, multifactor process that ensures accurate and efficient addition of amino acids to a growing nascent-peptide chain encoded in the sequence of translated messenger RNA (mRNA). Although translation elongation is heavily regulated by external factors, there is clear evidence that mRNA and nascent-peptide sequences control elongation dynamics, determining both the sequence and structure of synthesized proteins. Advances in methods have driven experiments that revealed the basic mechanisms of elongation as well as the mechanisms of regulation by mRNA and nascent-peptide sequences. In this review, we highlight how mRNA and nascent-peptide elements manipulate the translation machinery to alter the dynamics and pathway of elongation.

Entities:  

Keywords:  mRNA; nascent-peptide chain; protein synthesis; recoding; ribosome; translation control

Mesh:

Substances:

Year:  2018        PMID: 29925264      PMCID: PMC6594189          DOI: 10.1146/annurev-biochem-060815-014818

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  23 in total

1.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 2.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

3.  Pairs of amino acids at the P- and A-sites of the ribosome predictably and causally modulate translation-elongation rates.

Authors:  Nabeel Ahmed; Ulrike A Friedrich; Pietro Sormanni; Prajwal Ciryam; Naomi S Altman; Bernd Bukau; Günter Kramer; Edward P O'Brien
Journal:  J Mol Biol       Date:  2020-11-03       Impact factor: 5.469

4.  From reporters to endogenous genes: the impact of the first five codons on translation efficiency in Escherichia coli.

Authors:  Mariana H Moreira; Géssica C Barros; Rodrigo D Requião; Silvana Rossetto; Tatiana Domitrovic; Fernando L Palhano
Journal:  RNA Biol       Date:  2019-09-05       Impact factor: 4.652

5.  Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness.

Authors:  Ian M Walsh; Micayla A Bowman; Iker F Soto Santarriaga; Anabel Rodriguez; Patricia L Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-03       Impact factor: 11.205

6.  Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance.

Authors:  Kaitlyn Tsai; Vanja Stojković; Lianet Noda-Garcia; Iris D Young; Alexander G Myasnikov; Jordan Kleinman; Ali Palla; Stephen N Floor; Adam Frost; James S Fraser; Dan S Tawfik; Danica Galonić Fujimori
Journal:  Elife       Date:  2022-01-11       Impact factor: 8.140

7.  Oxygen level regulates N-terminal translation elongation of selected proteins through deoxyhypusine hydroxylation.

Authors:  Yugang Zhang; Dan Su; Julia Zhu; Miao Wang; Yandong Zhang; Qin Fu; Sheng Zhang; Hening Lin
Journal:  Cell Rep       Date:  2022-05-24       Impact factor: 9.995

8.  Ribosome slowdown triggers codon-mediated mRNA decay independently of ribosome quality control.

Authors:  Yuichiro Mishima; Peixun Han; Kota Ishibashi; Seisuke Kimura; Shintaro Iwasaki
Journal:  EMBO J       Date:  2022-01-18       Impact factor: 11.598

Review 9.  The role of mRNA in the development, diagnosis, treatment and prognosis of neural tumors.

Authors:  Yiyang Zheng; Yanyan Luo; Xixi Chen; Huiting Li; Baojun Huang; Baofeng Zhou; Liqing Zhu; Xianhui Kang; Wujun Geng
Journal:  Mol Cancer       Date:  2021-03-05       Impact factor: 27.401

Review 10.  From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion.

Authors:  John F Atkins; Kate M O'Connor; Pramod R Bhatt; Gary Loughran
Journal:  Viruses       Date:  2021-06-27       Impact factor: 5.048

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