Literature DB >> 29915149

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway.

Rekha Raghunathan1, Nicole K Polinski2, Joshua A Klein3, John D Hogan3, Chun Shao4, Kshitij Khatri4, Deborah Leon4, Mark E McComb4, Fredric P Manfredsson2, Caryl E Sortwell2, Joseph Zaia5,4,3.   

Abstract

Parkinson's disease (PD) is a neurological disorder characterized by the progressive loss of functional dopaminergic neurons in the nigrostriatal pathway in the brain. Although current treatments provide only symptomatic relief, gene therapy has the potential to slow or halt the degeneration of nigrostriatal dopamine neurons in PD patients. Adeno-associated viruses (AAV) are vectors of choice in gene therapy because of their well-characterized safety and efficacy profiles; however, although gene therapy has been successful in preclinical models of the disease, clinical trials in humans have failed to demonstrate efficacy. Significantly, all primary AAV receptors of the virus are glycans. We thus hypothesize that age related changes in glycan receptors of heparan sulfate (HS) proteoglycans (receptor for rAAV2), and/or N-glycans with terminal galactose (receptor for rAAV9) results in poor adeno-associated virus binding in either the striatum or substantia nigra, or both, affecting transduction and gene delivery. To test our hypothesis we analyzed the striatum and substantia nigra for changes in HS, N-glycans and proteomic signatures in young versus aged rat brain striatum and substantia nigra. We observed different brain region-specific HS disaccharide profiles in aged compared with young adult rats for brain region-specific profiles in striatum versus substantia nigra. We observed brain region- and age-specific N-glycan compositional profiles with respect to the terminal galactose units that serve as receptors for AAV9. We also observed brain region-specific changes in protein expression in the aging nigrostriatal pathway. These studies provide insight into age- and brain region-specific changes in glycan receptors and proteome that will inform design of improved viral vectors for Parkinson Disease (PD) gene therapy.
© 2018 Raghunathan et al.

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Year:  2018        PMID: 29915149      PMCID: PMC6126385          DOI: 10.1074/mcp.RA118.000680

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  44 in total

1.  Developmental changes in the expression of glycogenes and the content of N-glycans in the mouse cerebral cortex.

Authors:  Akihiro Ishii; Takeshi Ikeda; Seiji Hitoshi; Ichiro Fujimoto; Tomohiro Torii; Keiichiro Sakuma; Shin-ichi Nakakita; Sumihiro Hase; Kazuhiro Ikenaka
Journal:  Glycobiology       Date:  2006-12-15       Impact factor: 4.313

2.  S100B transgenic mice develop features of Parkinson's disease.

Authors:  Jialin Liu; Hailin Wang; Lianfeng Zhang; Yanfeng Xu; Wei Deng; Hua Zhu; Chuan Qin
Journal:  Arch Med Res       Date:  2011-01       Impact factor: 2.235

3.  Age-related changes in the glycoproteins of brain tissue.

Authors:  E G Brunngraber; J C Webster
Journal:  Mo Med       Date:  1985-10

Review 4.  Why Is N-Glycolylneuraminic Acid Rare in the Vertebrate Brain?

Authors:  Leela R L Davies; Ajit Varki
Journal:  Top Curr Chem       Date:  2015

5.  Compositional analysis and quantification of heparin and heparan sulfate by electrospray ionization ion trap mass spectrometry.

Authors:  Ola M Saad; Julie A Leary
Journal:  Anal Chem       Date:  2003-07-01       Impact factor: 6.986

6.  Workflow for combined proteomics and glycomics profiling from histological tissues.

Authors:  Lilla Turiák; Chun Shao; Le Meng; Kshitij Khatri; Nancy Leymarie; Qi Wang; Harry Pantazopoulos; Deborah R Leon; Joseph Zaia
Journal:  Anal Chem       Date:  2014-09-24       Impact factor: 6.986

7.  Differential adeno-associated virus serotype-specific interaction patterns with synthetic heparins and other glycans.

Authors:  Mario Mietzsch; Felix Broecker; Anika Reinhardt; Peter H Seeberger; Regine Heilbronn
Journal:  J Virol       Date:  2013-12-26       Impact factor: 5.103

8.  PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification.

Authors:  Jing Zhang; Lei Xin; Baozhen Shan; Weiwu Chen; Mingjie Xie; Denis Yuen; Weiming Zhang; Zefeng Zhang; Gilles A Lajoie; Bin Ma
Journal:  Mol Cell Proteomics       Date:  2011-12-20       Impact factor: 5.911

9.  Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.

Authors:  Kshitij Khatri; Joshua A Klein; Mitchell R White; Oliver C Grant; Nancy Leymarie; Robert J Woods; Kevan L Hartshorn; Joseph Zaia
Journal:  Mol Cell Proteomics       Date:  2016-03-16       Impact factor: 5.911

10.  Unbiased screen for interactors of leucine-rich repeat kinase 2 supports a common pathway for sporadic and familial Parkinson disease.

Authors:  Alexandria Beilina; Iakov N Rudenko; Alice Kaganovich; Laura Civiero; Hien Chau; Suneil K Kalia; Lorraine V Kalia; Evy Lobbestael; Ruth Chia; Kelechi Ndukwe; Jinhui Ding; Mike A Nalls; Maciej Olszewski; David N Hauser; Ravindran Kumaran; Andres M Lozano; Veerle Baekelandt; Lois E Greene; Jean-Marc Taymans; Elisa Greggio; Mark R Cookson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-07       Impact factor: 11.205

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  11 in total

1.  Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS.

Authors:  Jiandong Wu; Juan Wei; Pradeep Chopra; Geert-Jan Boons; Cheng Lin; Joseph Zaia
Journal:  Anal Chem       Date:  2019-08-29       Impact factor: 6.986

2.  Glycomic profiling and the mammalian brain.

Authors:  Jennyfer Tena; Carlito B Lebrilla
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

Review 3.  Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules.

Authors:  Rekha Raghunathan; Manveen K Sethi; Joshua A Klein; Joseph Zaia
Journal:  Mol Cell Proteomics       Date:  2019-08-30       Impact factor: 5.911

4.  Glycosylation and Aging.

Authors:  Ana Cindrić; Jasminka Krištić; Marina Martinić Kavur; Marija Pezer
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 3.650

5.  Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis.

Authors:  Manveen K Sethi; Margaret Downs; Joseph Zaia
Journal:  Mol Omics       Date:  2020-04-20

6.  Influence of saccharide modifications on heparin lyase III substrate specificities.

Authors:  Jiandong Wu; Pradeep Chopra; Geert-Jan Boons; Joseph Zaia
Journal:  Glycobiology       Date:  2022-03-30       Impact factor: 4.313

Review 7.  The dynamic brain N-glycome.

Authors:  Thomas S Klarić; Gordan Lauc
Journal:  Glycoconj J       Date:  2022-03-25       Impact factor: 2.916

8.  Long-term post-mortem studies following neurturin gene therapy in patients with advanced Parkinson's disease.

Authors:  Yaping Chu; Raymond T Bartus; Fredric P Manfredsson; C Warren Olanow; Jeffrey H Kordower
Journal:  Brain       Date:  2020-03-01       Impact factor: 13.501

9.  On-slide tissue digestion for mass spectrometry based glycomic and proteomic profiling.

Authors:  Rekha Raghunathan; Manveen K Sethi; Joseph Zaia
Journal:  MethodsX       Date:  2019-09-25

10.  Improving the Sensitivity for Quantifying Heparan Sulfate from Biological Samples.

Authors:  Zhangjie Wang; Vijay M Dhurandhare; Cressida A Mahung; Katelyn Arnold; Jine Li; Guowei Su; Ding Xu; Rob Maile; Jian Liu
Journal:  Anal Chem       Date:  2021-08-06       Impact factor: 8.008

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