| Literature DB >> 29912875 |
Chaitawat Sa-Ngamuang1, Peter Haddawy2, Viravarn Luvira3, Watcharapong Piyaphanee3, Sopon Iamsirithaworn4, Saranath Lawpoolsri1.
Abstract
Differentiating dengue patients from other acute febrile illness patients is a great challenge among physicians. Several dengue diagnosis methods are recommended by WHO. The application of specific laboratory tests is still limited due to high cost, lack of equipment, and uncertain validity. Therefore, clinical diagnosis remains a common practice especially in resource limited settings. Bayesian networks have been shown to be a useful tool for diagnostic decision support. This study aimed to construct Bayesian network models using basic demographic, clinical, and laboratory profiles of acute febrile illness patients to diagnose dengue. Data of 397 acute undifferentiated febrile illness patients who visited the fever clinic of the Bangkok Hospital for Tropical Diseases, Thailand, were used for model construction and validation. The two best final models were selected: one with and one without NS1 rapid test result. The diagnostic accuracy of the models was compared with that of physicians on the same set of patients. The Bayesian network models provided good diagnostic accuracy of dengue infection, with ROC AUC of 0.80 and 0.75 for models with and without NS1 rapid test result, respectively. The models had approximately 80% specificity and 70% sensitivity, similar to the diagnostic accuracy of the hospital's fellows in infectious disease. Including information on NS1 rapid test improved the specificity, but reduced the sensitivity, both in model and physician diagnoses. The Bayesian network model developed in this study could be useful to assist physicians in diagnosing dengue, particularly in regions where experienced physicians and laboratory confirmation tests are limited.Entities:
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Year: 2018 PMID: 29912875 PMCID: PMC6023245 DOI: 10.1371/journal.pntd.0006573
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Variables considered for inclusion in the Bayesian network model.
| Demographic characteristics | Clinical manifestation | Laboratory indicators |
|---|---|---|
| • Age | • Nausea | • Platelet |
Fig 1Final Bayesian network model for dengue diagnosis.
Demographic characteristics of acute undifferentiated febrile patients recruited in the study.
| N (%) | |
|---|---|
| Total | 397 |
| Gender | |
| Male | 226 (57) |
| Female | 171 (43) |
| Age (years); Mean (SD) | 33.7 (14.1) |
| Age groups (years) | |
| 15–20 | 85 (21.4) |
| 21–55 | 278 (70) |
| >55 | 34 (8.6) |
| Occupation | |
| Employee | 116 (30) |
| Officer | 90 (24) |
| Student | 85 (22) |
| Others | 92 (24) |
| Underlying disease | |
| Present | 122 (31) |
| Absent | 271 (69) |
Final diagnosis of dengue and non-dengue patients.
| Dengue cases | N (%) | Non-dengue cases | N (%) |
|---|---|---|---|
| Dengue single infection | 154 (84.1) | AUFI (Acute unidentified febrile illness) | 130 (60.8) |
| Dengue and Leptospirosis | 9 (4.9) | Murine typhus | 21 (9.8) |
| Dengue and Influenza | 8 (4.3) | Others | 17 (7.9) |
| Dengue and Murine typhus | 7 (3.8) | Leptospirosis | 16 (7.5) |
| Dengue and Scrub typhus | 2 (1.1) | Influenza | 15 (7.0) |
| Dengue and Typhoid | 1 (0.6) | Bacteremia | 4 (1.9) |
| Dengue and Leptospirosis and Murine typhus | 1 (0.6) | Scrub typhus | 4 (1.9) |
| Dengue and Hepatitis A | 1 (0.6) | Enteric fever | 2 (0.9) |
| Murine typhus and Influenza | 2 (0.9) | ||
| Bacteremia and influenza | 1 (0.5) | ||
| Leptospirosis and Influenza | 1 (0.5) | ||
| Leptospirosis and Scrub typhus | 1 (0.5) | ||
Performance of different dengue diagnosis models, determined by Area Under the Curve (AUC) of ROC analysis.
| Model | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
|---|---|---|---|---|---|---|---|
| Demographic characteristics | ✓ | ✓ | ✓ | ✓ | ✓ | ||
| Clinical manifestations | ✓ | ✓ | ✓ | ✓ | ✓ | ||
| Laboratory indicators | ✓ | ✓ | ✓ | ✓ | ✓ | ||
| NS1 antigen test | ✓ | ✓ | |||||
| Incidence rate | ✓ | ✓ | |||||
| 0.65 | 0.72 | 0.87 | 0.88 | 0.92 | 0.92 | 0.94 |
Mean and standard deviation of AUC using 10-fold cross-validation.
| Testing data set (ID) | AUC Model 6 (without NS1) | AUC Model 7 (with NS1) |
|---|---|---|
| ID: 1–40 | 0.76 | 0.87 |
| ID: 41–80 | 0.63 | 0.73 |
| ID: 81–120 | 0.81 | 0.87 |
| ID: 121–160 | 0.75 | 0.79 |
| ID: 161–200 | 0.71 | 0.81 |
| ID: 201–240 | 0.81 | 0.89 |
| ID: 241–280 | 0.62 | 0.72 |
| ID: 281–320 | 0.75 | 0.86 |
| ID: 321–360 | 0.69 | 0.81 |
| ID: 361–397 | 0.96 | 0.97 |
| 0.749 (0.09) | 0.83 (0.07) |
Overall accuracy of physician’s dengue diagnosis without NS1 rapid test result.
| Physician’s diagnosis | Confirmed diagnosis | ||
|---|---|---|---|
| Dengue | Non-dengue | Total | |
| 142 | 62 | 203 | |
| 41 | 152 | 193 | |
| 183 | 214 | 397 | |
Sensitivity 78%; Specificity 71%
Overall accuracy of physician’s dengue diagnosis with NS1 rapid test result.
| Physician’s diagnosis | Confirmed diagnosis | ||
|---|---|---|---|
| Dengue | Non-dengue | Total | |
| 137 | 44 | 181 | |
| 46 | 170 | 216 | |
| 183 | 214 | 397 | |
Sensitivity 75%; Specificity 79%
Overall performance on dengue diagnosis of BN model and physician.
| Diagnosis result with NS1 | Diagnosis result without NS1 | |||
|---|---|---|---|---|
| Mean (95% CI) | Mean (95% CI) | |||
| Physician | BN model | Physician | BN model | |
| 73.2 | 73.5 | 76.3 | 73.5 | |
| (66.9–79.5) | (63.7–83.7) | (68.9–83.7) | (62.5–84.5) | |
| 79.4 | 78.8 | 71.9 | 66.0 | |
| (72.7–86.1) | (69.0–88.4) | (65.6–78.2) | (57.5–74.5) | |
| 74.0 | 75.1 | 68.6 | 66.0 | |
| (63.0–85.0) | (63.6–86.6) | (57.6–79.6) | (58.6–73.4) | |
| 77.8 | 79.1 | 78.7 | 78.0 | |
| (71.8–83.8) | (72.0–86.1) | (71.6–85.8) | (70.4–85.6) | |
Note: Mean and 95% Confidence Interval (CI) were calculated based on 10-fold cross validation datasets