Literature DB >> 29912311

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities.

Eric M Bottos1,2, David W Kennedy1, Elvira B Romero1, Sarah J Fansler1, Joseph M Brown3, Lisa M Bramer4, Rosalie K Chu5, Malak M Tfaily5, Janet K Jansson1, James C Stegen1.   

Abstract

Understanding drivers of permafrost microbial community composition is critical for understanding permafrost microbiology and predicting ecosystem responses to thaw. We hypothesize that permafrost communities are shaped by physical constraints imposed by prolonged freezing, and exhibit spatial distributions that reflect dispersal limitation and selective pressures associated with these physical constraints. To test this, we characterized patterns of environmental variation and microbial community composition in permafrost across an Alaskan boreal forest landscape. We used null modeling to estimate the importance of selective and neutral assembly processes on community composition, and identified environmental factors influencing ecological selection through regression and structural equation modeling (SEM). Proportionally, the strongest process influencing community composition was dispersal limitation (0.36), exceeding the influence of homogenous selection (0.21), variable selection (0.16) and homogenizing dispersal (0.05). Fe(II) content was the most important factor explaining variable selection, and was significantly associated with total selection by univariate regression (R2 = 0.14, P = 0.003). SEM supported a model in which Fe(II) content mediated influences of the Gibbs free energy of the organic matter pool and organic acid concentration on total selection. These findings suggest that the dominant processes shaping microbial communities in permafrost result from the stability of the permafrost environment, which imposes dispersal and thermodynamic constraints.

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Year:  2018        PMID: 29912311     DOI: 10.1093/femsec/fiy110

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

1.  Elevational Gradients Impose Dispersal Limitation on Streptomyces.

Authors:  Janani Hariharan; Daniel H Buckley
Journal:  Front Microbiol       Date:  2022-05-03       Impact factor: 6.064

2.  The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw Succession.

Authors:  Stacey Jarvis Doherty; Robyn A Barbato; A Stuart Grandy; W Kelley Thomas; Sylvain Monteux; Ellen Dorrepaal; Margareta Johansson; Jessica G Ernakovich
Journal:  Front Microbiol       Date:  2020-11-13       Impact factor: 5.640

3.  Spatial scale structure soil bacterial communities across an Arctic landscape.

Authors:  Lucie A Malard; Muhammad Zohaib Anwar; Carsten S Jacobsen; David A Pearce
Journal:  Appl Environ Microbiol       Date:  2020-12-23       Impact factor: 4.792

4.  Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation.

Authors:  Anna Christine Trego; Paul G McAteer; Corine Nzeteu; Therese Mahony; Florence Abram; Umer Zeeshan Ijaz; Vincent O'Flaherty
Journal:  Front Microbiol       Date:  2021-05-14       Impact factor: 5.640

Review 5.  A framework for integrating microbial dispersal modes into soil ecosystem ecology.

Authors:  Mallory J Choudoir; Kristen M DeAngelis
Journal:  iScience       Date:  2022-02-10

6.  Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly.

Authors:  Robert E Danczak; Aditi Sengupta; Sarah J Fansler; Rosalie K Chu; Vanessa A Garayburu-Caruso; Lupita Renteria; Jason Toyoda; Jacqueline Wells; James C Stegen
Journal:  Front Microbiol       Date:  2022-02-18       Impact factor: 5.640

7.  Community Assembly and Co-Occurrence Patterns of Microeukaryotes in Thermokarst Lakes of the Yellow River Source Area.

Authors:  Ze Ren; Kang Ma; Xuan Jia; Qing Wang; Cheng Zhang; Xia Li
Journal:  Microorganisms       Date:  2022-02-21

8.  Microbial Community Changes in 26,500-Year-Old Thawing Permafrost.

Authors:  Maria Scheel; Athanasios Zervas; Carsten S Jacobsen; Torben R Christensen
Journal:  Front Microbiol       Date:  2022-03-24       Impact factor: 5.640

Review 9.  Microbiome assembly in thawing permafrost and its feedbacks to climate.

Authors:  Jessica G Ernakovich; Robyn A Barbato; Virginia I Rich; Christina Schädel; Rebecca E Hewitt; Stacey J Doherty; Emily D Whalen; Benjamin W Abbott; Jiri Barta; Christina Biasi; Chris L Chabot; Jenni Hultman; Christian Knoblauch; Maggie C Y Lau Vetter; Mary-Cathrine Leewis; Susanne Liebner; Rachel Mackelprang; Tullis C Onstott; Andreas Richter; Ursel M E Schütte; Henri M P Siljanen; Neslihan Taş; Ina Timling; Tatiana A Vishnivetskaya; Mark P Waldrop; Matthias Winkel
Journal:  Glob Chang Biol       Date:  2022-06-20       Impact factor: 13.211

10.  Optimization of subsampling, decontamination, and DNA extraction of difficult peat and silt permafrost samples.

Authors:  Alireza Saidi-Mehrabad; Patrick Neuberger; Maria Cavaco; Duane Froese; Brian Lanoil
Journal:  Sci Rep       Date:  2020-08-31       Impact factor: 4.379

  10 in total

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