Literature DB >> 29912199

A 3-dimensional (3D)-printed Template for High Throughput Zebrafish Embryo Arraying.

Tianyu Yu1, Yue Jiang2, Sijie Lin3.   

Abstract

The zebrafish is a globally recognized fresh water organism frequently used in developmental biology, environmental toxicology, and human disease related research fields. Thanks to its unique features, including large fecundity, embryo translucency, rapid and simultaneous development, etc., zebrafish embryos are often used for large scale toxicity assessment of chemicals and drug/compound screening. A typical screening procedure involves adult zebrafish spawning, embryos selection, and arraying the embryos into multi-well plates. From there, embryos are subjected to exposure and the toxicity of chemical, or the effectiveness of the drugs/compounds can be evaluated relatively quickly based on phenotypic observations. Among these processes, embryos arraying is one of the most time-consuming and labor-intensive steps that limits the throughput level. In this protocol, we present an innovative approach that makes use of a 3D-printed arraying template coupled with vacuum manipulation to speed up this laborious step. The protocol herein describes the overall design of the arraying template, a detailed experimental setup and step-by-step procedure, followed by representative results. When implemented, this approach should prove beneficial in a variety of research applications using zebrafish embryos as testing subjects.

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Year:  2018        PMID: 29912199      PMCID: PMC6101470          DOI: 10.3791/57892

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  11 in total

1.  Understanding the transformation, speciation, and hazard potential of copper particles in a model septic tank system using zebrafish to monitor the effluent.

Authors:  Sijie Lin; Alicia A Taylor; Zhaoxia Ji; Chong Hyun Chang; Nichola M Kinsinger; William Ueng; Sharon L Walker; André E Nel
Journal:  ACS Nano       Date:  2015-02-02       Impact factor: 15.881

2.  Zebrafish larvae could help to personalize cancer treatments.

Authors:  Mitch Leslie
Journal:  Science       Date:  2017-08-25       Impact factor: 47.728

3.  High content screening in zebrafish speeds up hazard ranking of transition metal oxide nanoparticles.

Authors:  Sijie Lin; Yan Zhao; Tian Xia; Huan Meng; Zhaoxia Ji; Rong Liu; Saji George; Sijing Xiong; Xiang Wang; Haiyuan Zhang; Suman Pokhrel; Lutz Mädler; Robert Damoiseaux; Shuo Lin; Andre E Nel
Journal:  ACS Nano       Date:  2011-08-25       Impact factor: 15.881

4.  Automated zebrafish chorion removal and single embryo placement: optimizing throughput of zebrafish developmental toxicity screens.

Authors:  David Mandrell; Lisa Truong; Caleb Jephson; Mushfiqur R Sarker; Aaron Moore; Christopher Lang; Michael T Simonich; Robert L Tanguay
Journal:  J Lab Autom       Date:  2012-02

5.  The zebrafish reference genome sequence and its relationship to the human genome.

Authors:  Kerstin Howe; Matthew D Clark; Carlos F Torroja; James Torrance; Camille Berthelot; Matthieu Muffato; John E Collins; Sean Humphray; Karen McLaren; Lucy Matthews; Stuart McLaren; Ian Sealy; Mario Caccamo; Carol Churcher; Carol Scott; Jeffrey C Barrett; Romke Koch; Gerd-Jörg Rauch; Simon White; William Chow; Britt Kilian; Leonor T Quintais; José A Guerra-Assunção; Yi Zhou; Yong Gu; Jennifer Yen; Jan-Hinnerk Vogel; Tina Eyre; Seth Redmond; Ruby Banerjee; Jianxiang Chi; Beiyuan Fu; Elizabeth Langley; Sean F Maguire; Gavin K Laird; David Lloyd; Emma Kenyon; Sarah Donaldson; Harminder Sehra; Jeff Almeida-King; Jane Loveland; Stephen Trevanion; Matt Jones; Mike Quail; Dave Willey; Adrienne Hunt; John Burton; Sarah Sims; Kirsten McLay; Bob Plumb; Joy Davis; Chris Clee; Karen Oliver; Richard Clark; Clare Riddle; David Elliot; David Eliott; Glen Threadgold; Glenn Harden; Darren Ware; Sharmin Begum; Beverley Mortimore; Beverly Mortimer; Giselle Kerry; Paul Heath; Benjamin Phillimore; Alan Tracey; Nicole Corby; Matthew Dunn; Christopher Johnson; Jonathan Wood; Susan Clark; Sarah Pelan; Guy Griffiths; Michelle Smith; Rebecca Glithero; Philip Howden; Nicholas Barker; Christine Lloyd; Christopher Stevens; Joanna Harley; Karen Holt; Georgios Panagiotidis; Jamieson Lovell; Helen Beasley; Carl Henderson; Daria Gordon; Katherine Auger; Deborah Wright; Joanna Collins; Claire Raisen; Lauren Dyer; Kenric Leung; Lauren Robertson; Kirsty Ambridge; Daniel Leongamornlert; Sarah McGuire; Ruth Gilderthorp; Coline Griffiths; Deepa Manthravadi; Sarah Nichol; Gary Barker; Siobhan Whitehead; Michael Kay; Jacqueline Brown; Clare Murnane; Emma Gray; Matthew Humphries; Neil Sycamore; Darren Barker; David Saunders; Justene Wallis; Anne Babbage; Sian Hammond; Maryam Mashreghi-Mohammadi; Lucy Barr; Sancha Martin; Paul Wray; Andrew Ellington; Nicholas Matthews; Matthew Ellwood; Rebecca Woodmansey; Graham Clark; James D Cooper; James Cooper; Anthony Tromans; Darren Grafham; Carl Skuce; Richard Pandian; Robert Andrews; Elliot Harrison; Andrew Kimberley; Jane Garnett; Nigel Fosker; Rebekah Hall; Patrick Garner; Daniel Kelly; Christine Bird; Sophie Palmer; Ines Gehring; Andrea Berger; Christopher M Dooley; Zübeyde Ersan-Ürün; Cigdem Eser; Horst Geiger; Maria Geisler; Lena Karotki; Anette Kirn; Judith Konantz; Martina Konantz; Martina Oberländer; Silke Rudolph-Geiger; Mathias Teucke; Christa Lanz; Günter Raddatz; Kazutoyo Osoegawa; Baoli Zhu; Amanda Rapp; Sara Widaa; Cordelia Langford; Fengtang Yang; Stephan C Schuster; Nigel P Carter; Jennifer Harrow; Zemin Ning; Javier Herrero; Steve M J Searle; Anton Enright; Robert Geisler; Ronald H A Plasterk; Charles Lee; Monte Westerfield; Pieter J de Jong; Leonard I Zon; John H Postlethwait; Christiane Nüsslein-Volhard; Tim J P Hubbard; Hugues Roest Crollius; Jane Rogers; Derek L Stemple
Journal:  Nature       Date:  2013-04-17       Impact factor: 49.962

Review 6.  Zebrafish: an in vivo model for nano EHS studies.

Authors:  Sijie Lin; Yan Zhao; André E Nel; Shuo Lin
Journal:  Small       Date:  2012-12-03       Impact factor: 13.281

7.  Aspect ratio plays a role in the hazard potential of CeO2 nanoparticles in mouse lung and zebrafish gastrointestinal tract.

Authors:  Sijie Lin; Xiang Wang; Zhaoxia Ji; Chong Hyun Chang; Yuan Dong; Huan Meng; Yu-Pei Liao; Meiying Wang; Tze-Bin Song; Sirus Kohan; Tian Xia; Jeffrey I Zink; Shuo Lin; André E Nel
Journal:  ACS Nano       Date:  2014-04-16       Impact factor: 15.881

8.  Large-scale Scanning Transmission Electron Microscopy (Nanotomy) of Healthy and Injured Zebrafish Brain.

Authors:  Jeroen Kuipers; Ruby D Kalicharan; Anouk H G Wolters; Tjakko J van Ham; Ben N G Giepmans
Journal:  J Vis Exp       Date:  2016-05-25       Impact factor: 1.355

9.  Automated phenotype recognition for zebrafish embryo based in vivo high throughput toxicity screening of engineered nano-materials.

Authors:  Rong Liu; Sijie Lin; Robert Rallo; Yan Zhao; Robert Damoiseaux; Tian Xia; Shuo Lin; Andre Nel; Yoram Cohen
Journal:  PLoS One       Date:  2012-04-10       Impact factor: 3.240

10.  Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.

Authors:  Scott C Baraban; Matthew T Dinday; Gabriela A Hortopan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  1 in total

1.  Standardized mounting method of (zebrafish) embryos using a 3D-printed stamp for high-content, semi-automated confocal imaging.

Authors:  David Simon Kleinhans; Virginie Lecaudey
Journal:  BMC Biotechnol       Date:  2019-10-22       Impact factor: 2.563

  1 in total

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