Literature DB >> 29907056

Calcium ions in aqueous solutions: Accurate force field description aided by ab initio molecular dynamics and neutron scattering.

Tomas Martinek1, Elise Duboué-Dijon1, Štěpán Timr1, Philip E Mason1, Katarina Baxová1, Henry E Fischer2, Burkhard Schmidt3, Eva Pluhařová4, Pavel Jungwirth1.   

Abstract

We present a combination of force field and ab initio molecular dynamics simulations together with neutron scattering experiments with isotopic substitution that aim at characterizing ion hydration and pairing in aqueous calcium chloride and formate/acetate solutions. Benchmarking against neutron scattering data on concentrated solutions together with ion pairing free energy profiles from ab initio molecular dynamics allows us to develop an accurate calcium force field which accounts in a mean-field way for electronic polarization effects via charge rescaling. This refined calcium parameterization is directly usable for standard molecular dynamics simulations of processes involving this key biological signaling ion.

Entities:  

Year:  2018        PMID: 29907056     DOI: 10.1063/1.5006779

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Second Harmonic Scattering Reveals Ion-Specific Effects at the SiO2 and TiO2 Nanoparticle/Aqueous Interface.

Authors:  Marie Bischoff; Denys Biriukov; Milan Předota; Arianna Marchioro
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-11-09       Impact factor: 4.177

2.  Probing calcium solvation by XAS, MD and DFT calculations.

Authors:  Feipeng Yang; Yi-Sheng Liu; Xuefei Feng; Kun Qian; Li Cheng Kao; Yang Ha; Nathan T Hahn; Trevor J Seguin; Mesfin Tsige; Wanli Yang; Kevin R Zavadil; Kristin A Persson; Jinghua Guo
Journal:  RSC Adv       Date:  2020-07-21       Impact factor: 3.361

Review 3.  Progress in Simulation Studies of Insulin Structure and Function.

Authors:  Biswajit Gorai; Harish Vashisth
Journal:  Front Endocrinol (Lausanne)       Date:  2022-06-20       Impact factor: 6.055

4.  Ionic Strength and Solution Composition Dictate the Adsorption of Cell-Penetrating Peptides onto Phosphatidylcholine Membranes.

Authors:  Man Thi Hong Nguyen; Denys Biriukov; Carmelo Tempra; Katarina Baxova; Hector Martinez-Seara; Hüseyin Evci; Vandana Singh; Radek Šachl; Martin Hof; Pavel Jungwirth; Matti Javanainen; Mario Vazdar
Journal:  Langmuir       Date:  2022-09-09       Impact factor: 4.331

5.  Accurate Biomolecular Simulations Account for Electronic Polarization.

Authors:  Josef Melcr; Jean-Philip Piquemal
Journal:  Front Mol Biosci       Date:  2019-12-04
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.