Literature DB >> 29906846

Power series solution of the inhomogeneous exclusion process.

Juraj Szavits-Nossan1, M Carmen Romano2, Luca Ciandrini3.   

Abstract

We develop a power series method for the nonequilibrium steady state of the inhomogeneous one-dimensional totally asymmetric simple exclusion process (TASEP) in contact with two particle reservoirs and with site-dependent hopping rates in the bulk. The power series is performed in the entrance or exit rates governing particle exchange with the reservoirs, and the corresponding particle current is computed analytically up to the cubic term in the entry or exit rate, respectively. We also show how to compute higher-order terms using combinatorial objects known as Young tableaux. Our results address the long outstanding problem of finding the exact nonequilibrium steady state of the inhomogeneous TASEP. The findings are particularly relevant to the modeling of mRNA translation in which the rate of translation initiation, corresponding to the entrance rate in the TASEP, is typically small.

Year:  2018        PMID: 29906846     DOI: 10.1103/PhysRevE.97.052139

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  2 in total

1.  EGGTART: A tool to visualize the dynamics of biophysical transport under the inhomogeneous l-TASEP.

Authors:  Dan D Erdmann-Pham; Wonjun Son; Khanh Dao Duc; Yun S Song
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

2.  What determines eukaryotic translation elongation: recent molecular and quantitative analyses of protein synthesis.

Authors:  Nagammal Neelagandan; Irene Lamberti; Hugo J F Carvalho; Cédric Gobet; Felix Naef
Journal:  Open Biol       Date:  2020-12-09       Impact factor: 6.411

  2 in total

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