Literature DB >> 29906830

Size and shape dependence of finite-volume Kirkwood-Buff integrals.

Peter Krüger1, Thijs J H Vlugt2.   

Abstract

Analytic relations are derived for finite-volume integrals over the pair correlation function of a fluid, the so-called Kirkwood-Buff integrals. Closed-form expressions are obtained for cubes and cuboids, the system shapes commonly employed in molecular simulations. When finite-volume Kirkwood-Buff integrals are expanded over an inverse system size, the leading term depends on shape only through the surface area-to-volume ratio. This conjecture is proved for arbitrary shapes and a general expression for the leading term is derived. From this, an extrapolation to the infinite-volume limit is proposed, which converges much faster with system size than previous approximations and thus significantly simplifies the numerical computations.

Year:  2018        PMID: 29906830     DOI: 10.1103/PhysRevE.97.051301

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  5 in total

1.  Kirkwood-Buff Integrals Using Molecular Simulation: Estimation of Surface Effects.

Authors:  Noura Dawass; Peter Krüger; Sondre K Schnell; Othonas A Moultos; Ioannis G Economou; Thijs J H Vlugt; Jean-Marc Simon
Journal:  Nanomaterials (Basel)       Date:  2020-04-16       Impact factor: 5.076

2.  Characterizing Polymer Hydration Shell Compressibilities with the Small-System Method.

Authors:  Madhusmita Tripathy; Swaminath Bharadwaj; Shadrack Jabes B; Nico F A van der Vegt
Journal:  Nanomaterials (Basel)       Date:  2020-07-25       Impact factor: 5.076

3.  Energetic, Structural and Dynamic Properties of Nucleobase-Urea Interactions that Aid in Urea Assisted RNA Unfolding.

Authors:  Tanashree Jaganade; Aditya Chattopadhyay; Nila M Pazhayam; U Deva Priyakumar
Journal:  Sci Rep       Date:  2019-06-19       Impact factor: 4.379

4.  Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling.

Authors:  Ahmadreza Rahbari; Remco Hens; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2020-02-12       Impact factor: 6.006

5.  Generalized Form for Finite-Size Corrections in Mutual Diffusion Coefficients of Multicomponent Mixtures Obtained from Equilibrium Molecular Dynamics Simulation.

Authors:  Seyed Hossein Jamali; André Bardow; Thijs J H Vlugt; Othonas A Moultos
Journal:  J Chem Theory Comput       Date:  2020-05-08       Impact factor: 6.006

  5 in total

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