Literature DB >> 29897397

Unravelling the genetic differentiation among varieties of the Neotropical savanna tree Hancornia speciosa Gomes.

Rosane G Collevatti1, Eduardo E Rodrigues1, Luciana C Vitorino2, Matheus S Lima-Ribeiro3, Lázaro J Chaves4, Mariana P C Telles1,5.   

Abstract

Background and Aims: Spatial distribution of species genetic diversity is often driven by geographical distance (isolation by distance) or environmental conditions (isolation by environment), especially under climate change scenarios such as Quaternary glaciations. Here, we used coalescent analyses coupled with ecological niche modelling (ENM), spatially explicit quantile regression analyses and the multiple matrix regression with randomization (MMRR) approach to unravel the patterns of genetic differentiation in the widely distributed Neotropical savanna tree, Hancornia speciosa (Apocynaceae). Due to its high morphological differentiation, the species was originally classified into six botanical varieties by Monachino, and has recently been recognized as only two varieties by Flora do Brasil 2020. Thus, H. speciosa is a good biological model for learning about evolution of phenotypic plasticity under genetic and ecological effects, and predicting their responses to changing environmental conditions.
Methods: We sampled 28 populations (777 individuals) of Monachino's four varieties of H. speciosa and used seven microsatellite loci to genotype them. Key
Results: Bayesian clustering showed five distinct genetic groups (K = 5) with high admixture among Monachino's varieties, mainly among populations in the central area of the species geographical range. Genetic differentiation among Monachino's varieties was lower than the genetic differentiation among populations within varieties, with higher within-population inbreeding. A high historical connectivity among populations of the central Cerrado shown by coalescent analyses may explain the high admixture among varieties. In addition, areas of higher climatic suitability also presented higher genetic diversity in such a way that the wide historical refugium across central Brazil might have promoted the long-term connectivity among populations. Yet, FST was significantly related to geographic distances, but not to environmental distances, and coalescent analyses and ENM predicted a demographical scenario of quasi-stability through time. Conclusions: Our findings show that demographical history and isolation by distance, but not isolation by environment, drove genetic differentiation of populations. Finally, the genetic clusters do not support the two recently recognized botanical varieties of H. speciosa, but partially support Monachino's classification at least for the four sampled varieties, similar to morphological variation.

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Year:  2018        PMID: 29897397      PMCID: PMC6266125          DOI: 10.1093/aob/mcy060

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  34 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Comparing likelihood and Bayesian coalescent estimation of population parameters.

Authors:  Mary K Kuhner; Lucian P Smith
Journal:  Genetics       Date:  2006-03-01       Impact factor: 4.562

3.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Authors:  Mattias Jakobsson; Noah A Rosenberg
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4.  Examining the full effects of landscape heterogeneity on spatial genetic variation: a multiple matrix regression approach for quantifying geographic and ecological isolation.

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Journal:  Evolution       Date:  2013-05-11       Impact factor: 3.694

5.  Surfing during population expansions promotes genetic revolutions and structuration.

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6.  Hybrid zones-natural laboratories for evolutionary studies.

Authors:  G M Hewitt
Journal:  Trends Ecol Evol       Date:  1988-07       Impact factor: 17.712

Review 7.  Isolation by environment.

Authors:  Ian J Wang; Gideon S Bradburd
Journal:  Mol Ecol       Date:  2014-10-16       Impact factor: 6.185

8.  High mutation rate and mutational bias at (TAA)n microsatellite loci in chickpea (Cicer arietinum L.).

Authors:  S M Udupa; M Baum
Journal:  Mol Genet Genomics       Date:  2001-08       Impact factor: 3.291

9.  A large historical refugium explains spatial patterns of genetic diversity in a Neotropical savanna tree species.

Authors:  Helena Augusta Viana E Souza; Rosane Garcia Collevatti; Matheus S Lima-Ribeiro; José Pires de Lemos-Filho; Maria Bernadete Lovato
Journal:  Ann Bot       Date:  2016-06-16       Impact factor: 4.357

10.  Relaxed random walk model coupled with ecological niche modeling unravel the dispersal dynamics of a Neotropical savanna tree species in the deeper Quaternary.

Authors:  Rosane G Collevatti; Levi C Terribile; Suelen G Rabelo; Matheus S Lima-Ribeiro
Journal:  Front Plant Sci       Date:  2015-08-25       Impact factor: 5.753

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