Literature DB >> 29893924

Genetic evaluation of age at first calving for Guzerá beef cattle using linear, threshold, and survival Bayesian models.

Lais C Brito1,2, Joaquim Casellas3, Luis Varona4,5, Paulo S Lopes1, Henrique T Ventura6, Maria Gabriela C D Peixoto7, Sirlene F Lázaro1, Fabyano F Silva1.   

Abstract

Age at first calving (AFC) is characterized as a censored trait due to missing values provided by recording mistakes and nonoccurrence or delay in calving communication. In this context, we aimed to compare several statistical methods for genetic evaluation of AFC in Guzerá beef cattle under a Bayesian approach. Seven different methods were used for this purpose. The traditional linear mixed model (LM), which considers only uncensored records; the LM with simulated records (SM), which is based on data augmentation framework; the penalty method, in which a constant of 21 d was added to censored records; the bivariate threshold-linear method considering (TLcens) or not (TLmiss) censored information; and the piecewise Weibull proportional hazards model considering (PWPHcens) or not (PWPH) censored records. Heritability estimates ranged from 0.19 (TLcens) to 0.28 (SM) in nonsurvival approaches; and 0.40 and 0.46 to PWPH and PWPHcens methods, respectively. In general, breeding values correlations between different methods and the percentage of selected bulls in common indicated reranking, with these correlation ranging from -0.28 (between SM and PWPH) to 0.99 (between TLmiss and LM). The traditional LM, which considers only uncensored records, should be preferred due to its robustness and simplicity. Based on cross-validation analyses, we conclude that the TLmiss could be also a suitable alternative for breeding value prediction, and censored methods did not improve the analysis.

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Year:  2018        PMID: 29893924      PMCID: PMC6095355          DOI: 10.1093/jas/sky112

Source DB:  PubMed          Journal:  J Anim Sci        ISSN: 0021-8812            Impact factor:   3.159


  17 in total

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Authors:  E Pereira; H N de Oliveira; J P Eler; J A li de V Silva; M H Van Melis
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5.  A bivariate quantitative genetic model for a linear Gaussian trait and a survival trait.

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Journal:  Genet Sel Evol       Date:  2006 Jan-Feb       Impact factor: 4.297

6.  Bayesian inference in a piecewise Weibull proportional hazards model with unknown change points.

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Journal:  J Anim Breed Genet       Date:  2007-08       Impact factor: 2.380

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8.  Comparison of linear, skewed-linear, and proportional hazard models for the analysis of lambing interval in Ripollesa ewes.

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Journal:  J Anim Sci       Date:  2011-12-28       Impact factor: 3.159

9.  Genetic and environmental factors influencing mortality up to weaning of Bruna dels Pirineus beef calves in mountain areas. A survival analysis.

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Journal:  J Anim Sci       Date:  2005-03       Impact factor: 3.159

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Journal:  J Anim Sci       Date:  2004-02       Impact factor: 3.159

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