Literature DB >> 29893199

Genetic Characterization of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae) and Evidence That Estero Real Virus is a Member of the Genus Orthonairovirus.

Patricia V Aguilar1,2,3, William Marciel de Souza4, Jesus A Silvas2,3,1, Thomas Wood5, Steven Widen5, Marcílio Jorge Fumagalli4, Márcio Roberto Teixeira Nunes6.   

Abstract

Estero Real virus (ERV) was isolated in 1980 from Ornithodoros tadaridae ticks collected in El Estero Real, Sancti Spiritus, Cuba. Antigenic characterization of the isolate based on serological methods found a relationship with Abras and Zegla viruses and, consequently, the virus was classified taxonomically within the Patois serogroup. Given the fact that genetic characterization of Patois serogroup viruses has not yet been reported and that ERV is the only virus within the Patois serogroup isolated from ticks, we recently conducted nearly complete genome sequencing in an attempt to gain further insight into the genetic relationship of ERV with other Patois serogroup viruses and members of Peribunyaviridae family (Bunyavirales order). With the exception of ERV, our sequencing and phylogenetic studies revealed the close relationship of the Patois serogroup viruses to each other, forming a clear divergent clade from other members of the Orthobunyavirus genus (Peribunyaviridae family). Notably, our analysis also revealed that ERV forms a monophyletic clade that is closely related to species of the Orthonairovirus genus (Nairoviridae family) in all the genome segments. In light of these findings, we believe that the taxonomic classification of ERV should be revised.

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Year:  2018        PMID: 29893199      PMCID: PMC6090349          DOI: 10.4269/ajtmh.18-0201

Source DB:  PubMed          Journal:  Am J Trop Med Hyg        ISSN: 0002-9637            Impact factor:   2.345


  31 in total

1.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

2.  Ecologic studies of Venezuelan encephalitis virus and isolations of Nepuyo and Patois viruses during 1968-1973 at a marsh habitat near the epicenter of the 1969 outbreak in Guatemala.

Authors:  W F Scherer; R W Dickerman; J V Ordonez; C Seymour; L D Kramer; P B Jahrling; C D Powers
Journal:  Am J Trop Med Hyg       Date:  1976-01       Impact factor: 2.345

3.  Intergroup antigenic relationships among Arboviruses manifested by a Mexican strain of Patois virus and viruses of the Bunyamwera, C, California, Capim and Guama groups.

Authors:  M L Zarate; R H Geiger; R E Shope; W F Scherer
Journal:  Am J Epidemiol       Date:  1968-09       Impact factor: 4.897

4.  Estero real virus: a new virus isolated from argasid ticks Ornithodoros tadaridae in Cuba.

Authors:  D Málková; J Holubová; V Cerný; M Daniel; A Fernández; J de la Cruz; M Herrera; C H Calisher
Journal:  Acta Virol       Date:  1985-05       Impact factor: 1.162

5.  Isolation of a novel orthobunyavirus (Brazoran virus) with a 1.7 kb S segment that encodes a unique nucleocapsid protein possessing two putative functional domains.

Authors:  Robert S Lanciotti; Olga I Kosoy; Angela M Bosco-Lauth; Jan Pohl; Olga Stuchlik; Matthew Reed; Amy J Lambert
Journal:  Virology       Date:  2013-06-19       Impact factor: 3.616

6.  Ecologic observations of Venezuelan encephalitis virus in vertebrates and isolations of Nepuyo and Patois viruses from sentinel hamsters at Pacific and Atlantic habitats in Guatemala, 1968-1980.

Authors:  W F Scherer; R W Dickerman; E W Cupp; J V Ordonez
Journal:  Am J Trop Med Hyg       Date:  1985-07       Impact factor: 2.345

7.  Bunyaviruses and the type I interferon system.

Authors:  Richard M Elliott; Friedemann Weber
Journal:  Viruses       Date:  2009-11-23       Impact factor: 5.048

8.  Itaya virus, a Novel Orthobunyavirus Associated with Human Febrile Illness, Peru.

Authors:  Robert D Hontz; Carolina Guevara; Eric S Halsey; Jesus Silvas; Felix W Santiago; Steven G Widen; Thomas G Wood; Wilma Casanova; Nikos Vasilakis; Douglas M Watts; Tadeusz J Kochel; Hideki Ebihara; Patricia V Aguilar
Journal:  Emerg Infect Dis       Date:  2015-05       Impact factor: 6.883

9.  RDP4: Detection and analysis of recombination patterns in virus genomes.

Authors:  Darren P Martin; Ben Murrell; Michael Golden; Arjun Khoosal; Brejnev Muhire
Journal:  Virus Evol       Date:  2015-05-26

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  5 in total

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Authors:  Holly R Hughes; Brandy J Russell; Amy J Lambert
Journal:  Am J Trop Med Hyg       Date:  2020-02       Impact factor: 2.345

2.  Taxonomy of the order Bunyavirales: update 2019.

Authors:  Abulikemu Abudurexiti; Scott Adkins; Daniela Alioto; Sergey V Alkhovsky; Tatjana Avšič-Županc; Matthew J Ballinger; Dennis A Bente; Martin Beer; Éric Bergeron; Carol D Blair; Thomas Briese; Michael J Buchmeier; Felicity J Burt; Charles H Calisher; Chénchén Cháng; Rémi N Charrel; Il Ryong Choi; J Christopher S Clegg; Juan Carlos de la Torre; Xavier de Lamballerie; Fēi Dèng; Francesco Di Serio; Michele Digiaro; Michael A Drebot; Xiǎoméi Duàn; Hideki Ebihara; Toufic Elbeaino; Koray Ergünay; Charles F Fulhorst; Aura R Garrison; George Fú Gāo; Jean-Paul J Gonzalez; Martin H Groschup; Stephan Günther; Anne-Lise Haenni; Roy A Hall; Jussi Hepojoki; Roger Hewson; Zhìhóng Hú; Holly R Hughes; Miranda Gilda Jonson; Sandra Junglen; Boris Klempa; Jonas Klingström; Chūn Kòu; Lies Laenen; Amy J Lambert; Stanley A Langevin; Dan Liu; Igor S Lukashevich; Tāo Luò; Chuánwèi Lǚ; Piet Maes; William Marciel de Souza; Marco Marklewitz; Giovanni P Martelli; Keita Matsuno; Nicole Mielke-Ehret; Maria Minutolo; Ali Mirazimi; Abulimiti Moming; Hans-Peter Mühlbach; Rayapati Naidu; Beatriz Navarro; Márcio Roberto Teixeira Nunes; Gustavo Palacios; Anna Papa; Alex Pauvolid-Corrêa; Janusz T Pawęska; Jié Qiáo; Sheli R Radoshitzky; Renato O Resende; Víctor Romanowski; Amadou Alpha Sall; Maria S Salvato; Takahide Sasaya; Shū Shěn; Xiǎohóng Shí; Yukio Shirako; Peter Simmonds; Manuela Sironi; Jin-Won Song; Jessica R Spengler; Mark D Stenglein; Zhèngyuán Sū; Sùróng Sūn; Shuāng Táng; Massimo Turina; Bó Wáng; Chéng Wáng; Huálín Wáng; Jūn Wáng; Tàiyún Wèi; Anna E Whitfield; F Murilo Zerbini; Jìngyuàn Zhāng; Lěi Zhāng; Yànfāng Zhāng; Yong-Zhen Zhang; Yújiāng Zhāng; Xueping Zhou; Lìyǐng Zhū; Jens H Kuhn
Journal:  Arch Virol       Date:  2019-05-07       Impact factor: 2.574

3.  Barrita Virus, a Novel Virus of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae).

Authors:  Diana Fernández; William Marciel de Souza; Jesus A Silvas; Eleanor R Deardorff; Steven G Widen; Jose G Estrada-Franco; Scott C Weaver; Marcio Nunes; Patricia V Aguilar
Journal:  Am J Trop Med Hyg       Date:  2020-05-21       Impact factor: 2.345

4.  Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses.

Authors:  Marylee L Kapuscinski; Nicholas A Bergren; Brandy J Russell; Justin S Lee; Erin M Borland; Daniel A Hartman; David C King; Holly R Hughes; Kristen L Burkhalter; Rebekah C Kading; Mark D Stenglein
Journal:  PLoS Pathog       Date:  2021-03-01       Impact factor: 6.823

5.  Human-Pathogenic Kasokero Virus in Field-Collected Ticks.

Authors:  Amy J Schuh; Brian R Amman; Ketan Patel; Tara K Sealy; Robert Swanepoel; Jonathan S Towner
Journal:  Emerg Infect Dis       Date:  2020-12       Impact factor: 6.883

  5 in total

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