Literature DB >> 29888298

An Enhanced Visualization Method to Aid Behavioral Trajectory Pattern Recognition Infrastructure for Big Longitudinal Data.

Hua Fang1, Zhaoyang Zhang2.   

Abstract

Big longitudinal data provide more reliable information for decision making and are common in all kinds of fields. Trajectory pattern recognition is in an urgent need to discover important structures for such data. Developing better and more computationally-efficient visualization tool is crucial to guide this technique. This paper proposes an enhanced projection pursuit (EPP) method to better project and visualize the structures (e.g. clusters) of big high-dimensional (HD) longitudinal data on a lower-dimensional plane. Unlike classic PP methods potentially useful for longitudinal data, EPP is built upon nonlinear mapping algorithms to compute its stress (error) function by balancing the paired weights for between and within structure stress while preserving original structure membership in the high-dimensional space. Specifically, EPP solves an NP hard optimization problem by integrating gradual optimization and non-linear mapping algorithms, and automates the searching of an optimal number of iterations to display a stable structure for varying sample sizes and dimensions. Using publicized UCI and real longitudinal clinical trial datasets as well as simulation, EPP demonstrates its better performance in visualizing big HD longitudinal data.

Entities:  

Keywords:  Enhanced projection pursuit; Longitudinal data; Pattern recognition; Visualization

Year:  2017        PMID: 29888298      PMCID: PMC5990046          DOI: 10.1109/TBDATA.2017.2653815

Source DB:  PubMed          Journal:  IEEE Trans Big Data        ISSN: 2332-7790


  24 in total

1.  A global geometric framework for nonlinear dimensionality reduction.

Authors:  J B Tenenbaum; V de Silva; J C Langford
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  Pattern Recognition of Longitudinal Trial Data with Nonignorable Missingness: An Empirical Case Study.

Authors:  Hua Fang; Kimberly Andrews Espy; Maria L Rizzo; Christian Stopp; Sandra A Wiebe; Walter W Stroup
Journal:  Int J Inf Technol Decis Mak       Date:  2009-09-01

Review 3.  Applications of next-generation sequencing technologies in functional genomics.

Authors:  Olena Morozova; Marco A Marra
Journal:  Genomics       Date:  2008-08-24       Impact factor: 5.736

4.  aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction.

Authors:  Douglas E V Pires; Raquel C de Melo-Minardi; Carlos H da Silveira; Frederico F Campos; Wagner Meira
Journal:  Bioinformatics       Date:  2013-02-08       Impact factor: 6.937

5.  Multiple- vs Non- or Single-Imputation based Fuzzy Clustering for Incomplete Longitudinal Behavioral Intervention Data.

Authors:  Zhaoyang Zhang; Hua Fang
Journal:  IEEE Int Conf Connect Health Appl Syst Eng Technol       Date:  2016-08-18

6.  A new nonlinear classifier with a penalized signed fuzzy measure using effective genetic algorithm.

Authors:  Hua Fang; Maria L Rizzo; Honggang Wang; Kimberly Andrews Espy; Zhenyuan Wang
Journal:  Pattern Recognit       Date:  2010       Impact factor: 7.740

7.  Large-scale electrophysiology: acquisition, compression, encryption, and storage of big data.

Authors:  Benjamin H Brinkmann; Mark R Bower; Keith A Stengel; Gregory A Worrell; Matt Stead
Journal:  J Neurosci Methods       Date:  2009-04-01       Impact factor: 2.390

8.  Growth mixture modeling of academic achievement in children of varying birth weight risk.

Authors:  Kimberly Andrews Espy; Hua Fang; David Charak; Nori Minich; H Gerry Taylor
Journal:  Neuropsychology       Date:  2009-07       Impact factor: 3.295

9.  Detecting graded exposure effects: a report on an East Boston pregnancy cohort.

Authors:  Hua Fang; Vanja Dukic; Kate E Pickett; Lauren Wakschlag; Kimberly Andrews Espy
Journal:  Nicotine Tob Res       Date:  2012-01-20       Impact factor: 4.244

10.  TASUKE: a web-based visualization program for large-scale resequencing data.

Authors:  Masahiko Kumagai; Jungsok Kim; Ryutaro Itoh; Takeshi Itoh
Journal:  Bioinformatics       Date:  2013-06-07       Impact factor: 6.937

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  3 in total

1.  Topic modeling for systematic review of visual analytics in incomplete longitudinal behavioral trial data.

Authors:  Joshua Rumbut; Hua Fang; Honggong Wang
Journal:  Smart Health (Amst)       Date:  2020-11-13

2.  MIFuzzy Clustering for Incomplete Longitudinal Data in Smart Health.

Authors:  Hua Fang
Journal:  Smart Health (Amst)       Date:  2017-04-27

3.  Acculturation, Depression, and Smoking Cessation: a trajectory pattern recognition approach.

Authors:  Sun S Kim; Hua Fang; Kunsook Bernstein; Zhaoyang Zhang; Joseph DiFranza; Douglas Ziedonis; Jeroan Allison
Journal:  Tob Induc Dis       Date:  2017-07-24       Impact factor: 2.600

  3 in total

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