| Literature DB >> 29888049 |
Samuel Hume1, Anthony Chow1, Julie Evans2, Frederik Malfait3, Julie Chason1, J Darcy Wold1, Wayne Kubick4, Lauren B Becnel1,5.
Abstract
The Clinical Data Interchange Standards Consortium (CDISC) is a global non-profit standards development organization that creates consensus-based standards for clinical and translational research. Several of these standards are now required by regulators for electronic submissions of regulated clinical trials' data and by government funding agencies. These standards are free and open, available for download on the CDISC Website as PDFs. While these documents are human readable, they are not amenable to ready use by electronic systems. CDISC launched the CDISC Shared Health And Research Electronic library (SHARE) to provide the standards metadata in machine-readable formats to facilitate the automated management and implementation of the standards. This paper describes how CDISC SHARE'S standards can facilitate collecting, aggregating and analyzing standardized data from early design to end analysis; and its role as a central resource providing information systems with metadata that drives process automation including study setup and data pipelining.Entities:
Year: 2018 PMID: 29888049 PMCID: PMC5961771
Source DB: PubMed Journal: AMIA Jt Summits Transl Sci Proc
Figure 1.CDISC End-to-end Standards including Foundational Standards, Semantics, and TA Standards
Figure 2.CDISC SHARE metamodel hierarchy
Figure 3.CDISC Breast Cancer TA Concept Map for Biomedical Concepts
Glossary of acronyms
| Acronym | Definition | Acronym | Definition |
|---|---|---|---|
| ADaM | Analysis Dataset Model | JSON | Java Script Object Notation |
| AMA | American Medical Association | FDA | US Food andDrug Administration |
| API | Application Programming Interface | FHIR | Fast Healthcare Interoperability Resources |
| BRIDG | Biomedical Research Integrated Domain Group | MDB | Microsoft Database |
| CDA | Clinical Document Architecture | MDR | Metadata Repository |
| CDASH | Clinical Data Acquisition Standards Harmonization | NCI | National Cancer Institute (US) |
| CDISC | Clinical Data Interchange Standards Consortium(SDO) | NIH | National Institutes of Health (US) |
| CIMI | Clinical Information Modeling Initiative | ODM | Operational Data Model |
| CPT | Current Procedural Terminology | Portable Document Format | |
| CSV | Comma Separated Values | PMDA | Japan Pharmaceuticals and Medical DevicesAgency |
| DDI | Data Document Initiative | PRM | CDISC Protocol Representation Model |
| Define-XML | CDISC standard for dataset metadata in XML format | RDF | Resource Description Format |
| EHR | Electronic Health Record | RELMA | RegenstriefLOINCMapping Assistant |
| EMA | European Medicines Agency | HL7 | Health Level 7 (SDO) |
| EVS | Enterprise Vocabulary Services (NCI) | ICD | International Classification of Diseases |
| ISO | International Standards Organization | IMI | Innovative Medicines Initiative |
| LOINC | Logical Observation Identifiers Names and Codes | SNOMED CT | Systematized Nomenclature of Medicine-Clinical Terms |
| REST | REpresentational State Transfer | TA | Therapeutic Area |
| SDO | Standards Development Organization | WHO | World Health Organization |
| SDTM | Study Data Tabulation Model | W3C | World Wide Web Consortium |
| SEND | Standard for Exchange of Nonclinical Data | XML | eXtensible Markup Language (W3C) |
| SHARE | Shared Health and Research Electronic library | XSLT | eXtensible Stylesheet LanguageTransformations |
Comparison of Methods for Accessing Standards Metadata (see Table 2 for acronym definitions)
| Standard | Methods of Accessing Computable Standards Metadata | Online Repository? | API? |
|---|---|---|---|
| CDISC |
RESTful API Content standard downloads in XML, JSON, and RDF XML schemas and conformance rules | Metadata Repository | Yes |
| DDI |
XML schema XML and RDF vocabularies | No | No |
| Data Exchange Standards | |||
| HL7 FHIR® |
XML, JSON, and RDF schemas | N/A | N/A |
| HL7 CDA® R2 |
XML schemas, schematron, and XSLT | No | No |
| LOINC® |
RELMA® application to search the LOINC database and map to LOINC codes The LOINC table in MicrosoftAccess or CSV FHIR RESTful API pilot | Yes | Yes |
| SNOMED CT® |
Open source SNOMED CT online Browser SNOMED CT machine readable concept model Mapping tool RESTful API-not for healthcare system use | Terminology Browser | Yes |
| WHO ICD |
Download ICD-10 in Classification Markup LanguageICD-10 online browser | Terminology Browser | No |
| AMA CPT® |
MicrosoftAccess MDB and CSV download CPT® Developer's Tool Kit for download only CPT® Assistant Online SNOMED CT® to CPT® Rules-Based Cross Maps | Terminology Browser | No |
Schemas and API are fully documented and multiple reference implementations exist online.
LOINC is piloting a FHIR-based RESTful API
SNOMED CT provides a RESTful API for lookups, but it is not available for use in production healthcare systems