Literature DB >> 29885355

G4RNA screener web server: User focused interface for RNA G-quadruplex prediction.

Jean-Michel Garant1, Jean-Pierre Perreault2, Michelle S Scott3.   

Abstract

Though RNA G-quadruplexes became a focus of study over a decade ago, the main challenge associated with the identification of new potential G-quadruplexes remains a bottleneck step. It slows the study of these non-canonical structures in nucleic acids, and thus the understanding of their significance. The G4RNA screener is an accurate tool for the prediction of RNA G-quadruplexes but its deployment has brought to light an issue with its accessibility to G-quadruplex experts and biologists. G4RNA screener web server is a platform that provides a much needed interface to manage the input, parameters and result display of the main command-line ready tool. It is accessible at http://scottgroup.med.usherbrooke.ca/G4RNA_screener/.
Copyright © 2018 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Keywords:  Bioinformatic predictor; RNA G-quadruplex; Webserver

Mesh:

Substances:

Year:  2018        PMID: 29885355     DOI: 10.1016/j.biochi.2018.06.002

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  18 in total

1.  G-quadruplex occurrence and conservation: more than just a question of guanine-cytosine content.

Authors:  Anaïs Vannutelli; Jean-Pierre Perreault; Aïda Ouangraoua
Journal:  NAR Genom Bioinform       Date:  2022-03-04

2.  G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Authors:  H Busra Cagirici; Hikmet Budak; Taner Z Sen
Journal:  BMC Bioinformatics       Date:  2022-06-18       Impact factor: 3.307

3.  A guide to computational methods for G-quadruplex prediction.

Authors:  Emilia Puig Lombardi; Arturo Londoño-Vallejo
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

4.  In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles.

Authors:  Martin Bartas; Václav Brázda; Natália Bohálová; Alessio Cantara; Adriana Volná; Tereza Stachurová; Kateřina Malachová; Eva B Jagelská; Otília Porubiaková; Jiří Červeň; Petr Pečinka
Journal:  Front Microbiol       Date:  2020-07-03       Impact factor: 5.640

5.  G-quadruplexes formation in the 5'UTRs of mRNAs associated with colorectal cancer pathways.

Authors:  Rachel Jodoin; Jean-Pierre Perreault
Journal:  PLoS One       Date:  2018-12-03       Impact factor: 3.240

6.  G4HunterApps.

Authors:  Laurent Lacroix
Journal:  Bioinformatics       Date:  2019-07-01       Impact factor: 6.937

7.  G4Hunter web application: a web server for G-quadruplex prediction.

Authors:  Václav Brázda; Jan Kolomazník; Jiří Lýsek; Martin Bartas; Miroslav Fojta; Jiří Šťastný; Jean-Louis Mergny
Journal:  Bioinformatics       Date:  2019-09-15       Impact factor: 6.937

Review 8.  How bioinformatics resources work with G4 RNAs.

Authors:  Joanna Miskiewicz; Joanna Sarzynska; Marta Szachniuk
Journal:  Brief Bioinform       Date:  2021-05-20       Impact factor: 11.622

9.  CNBP Binds and Unfolds In Vitro G-Quadruplexes Formed in the SARS-CoV-2 Positive and Negative Genome Strands.

Authors:  Georgina Bezzi; Ernesto J Piga; Andrés Binolfi; Pablo Armas
Journal:  Int J Mol Sci       Date:  2021-03-05       Impact factor: 5.923

10.  G-quadruplex located in the 5'UTR of the BAG-1 mRNA affects both its cap-dependent and cap-independent translation through global secondary structure maintenance.

Authors:  Rachel Jodoin; Julie C Carrier; Nathalie Rivard; Martin Bisaillon; Jean-Pierre Perreault
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

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