Literature DB >> 29883734

A supervised learning approach for diffusion MRI quality control with minimal training data.

Mark S Graham1, Ivana Drobnjak2, Hui Zhang2.   

Abstract

Quality control (QC) is a fundamental component of any study. Diffusion MRI has unique challenges that make manual QC particularly difficult, including a greater number of artefacts than other MR modalities and a greater volume of data. The gold standard is manual inspection of the data, but this process is time-consuming and subjective. Recently supervised learning approaches based on convolutional neural networks have been shown to be competitive with manual inspection. A drawback of these approaches is they still require a manually labelled dataset for training, which is itself time-consuming to produce and still introduces an element of subjectivity. In this work we demonstrate the need for manual labelling can be greatly reduced by training on simulated data, and using a small amount of labelled data for a final calibration step. We demonstrate its potential for the detection of severe movement artefacts, and compare performance to a classifier trained on manually-labelled real data.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29883734     DOI: 10.1016/j.neuroimage.2018.05.077

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  7 in total

Review 1.  What's new and what's next in diffusion MRI preprocessing.

Authors:  Chantal M W Tax; Matteo Bastiani; Jelle Veraart; Eleftherios Garyfallidis; M Okan Irfanoglu
Journal:  Neuroimage       Date:  2021-12-26       Impact factor: 7.400

2.  Fast qualitY conTrol meThod foR derIved diffUsion Metrics (YTTRIUM) in big data analysis: U.K. Biobank 18,608 example.

Authors:  Ivan I Maximov; Dennis van der Meer; Ann-Marie G de Lange; Tobias Kaufmann; Alexey Shadrin; Oleksandr Frei; Thomas Wolfers; Lars T Westlye
Journal:  Hum Brain Mapp       Date:  2021-03-31       Impact factor: 5.038

3.  Automated Multiclass Artifact Detection in Diffusion MRI Volumes via 3D Residual Squeeze-and-Excitation Convolutional Neural Networks.

Authors:  Nabil Ettehadi; Pratik Kashyap; Xuzhe Zhang; Yun Wang; David Semanek; Karan Desai; Jia Guo; Jonathan Posner; Andrew F Laine
Journal:  Front Hum Neurosci       Date:  2022-03-30       Impact factor: 3.473

4.  QC-Automator: Deep Learning-Based Automated Quality Control for Diffusion MR Images.

Authors:  Zahra Riahi Samani; Jacob Antony Alappatt; Drew Parker; Abdol Aziz Ould Ismail; Ragini Verma
Journal:  Front Neurosci       Date:  2020-01-22       Impact factor: 4.677

5.  Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI With Limited and Noisy Annotations.

Authors:  Siyuan Liu; Kim-Han Thung; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  IEEE Trans Med Imaging       Date:  2020-10-28       Impact factor: 10.048

6.  Graph-Based Motion Artifacts Detection Method from Head Computed Tomography Images.

Authors:  Yiwen Liu; Tao Wen; Wei Sun; Zhenyu Liu; Xiaoying Song; Xuan He; Shuo Zhang; Zhenning Wu
Journal:  Sensors (Basel)       Date:  2022-07-28       Impact factor: 3.847

7.  Multimodal brain-age prediction and cardiovascular risk: The Whitehall II MRI sub-study.

Authors:  Ann-Marie G de Lange; Melis Anatürk; Sana Suri; Tobias Kaufmann; James H Cole; Ludovica Griffanti; Enikő Zsoldos; Daria E A Jensen; Nicola Filippini; Archana Singh-Manoux; Mika Kivimäki; Lars T Westlye; Klaus P Ebmeier
Journal:  Neuroimage       Date:  2020-08-21       Impact factor: 6.556

  7 in total

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