Literature DB >> 29883607

Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.

Rainer Nikolay1, Tarek Hilal1, Bo Qin1, Thorsten Mielke2, Jörg Bürger3, Justus Loerke1, Kathrin Textoris-Taube4, Knud H Nierhaus5, Christian M T Spahn6.   

Abstract

The assembly of ribosomal subunits is an essential prerequisite for protein biosynthesis in all domains of life. Although biochemical and biophysical approaches have advanced our understanding of ribosome assembly, our mechanistic comprehension of this process is still limited. Here, we perform an in vitro reconstitution of the Escherichia coli 50S ribosomal subunit. Late reconstitution products were subjected to high-resolution cryo-electron microscopy and multiparticle refinement analysis to reconstruct five distinct precursors of the 50S subunit with 4.3-3.8 Å resolution. These assembly intermediates define a progressive maturation pathway culminating in a late assembly particle, whose structure is more than 96% identical to a mature 50S subunit. Our structures monitor the formation and stabilization of structural elements in a nascent particle in unprecedented detail and identify the maturation of the rRNA-based peptidyl transferase center as the final critical step along the 50S assembly pathway.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  50S in vitro reconstitution; 50S subunit; cryo-EM map; cryo-electron microscopy; large ribosomal subunit; ribosome; ribosome assembly; ribosome biogenesis; structure

Mesh:

Substances:

Year:  2018        PMID: 29883607     DOI: 10.1016/j.molcel.2018.05.003

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  12 in total

1.  Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation.

Authors:  Wei Wang; Wanqiu Li; Xueliang Ge; Kaige Yan; Chandra Sekhar Mandava; Suparna Sanyal; Ning Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-22       Impact factor: 11.205

2.  Ribosomal protein eL39 is important for maturation of the nascent polypeptide exit tunnel and proper protein folding during translation.

Authors:  Jelena Micic; Olga Rodríguez-Galán; Reyes Babiano; Fiona Fitzgerald; José Fernández-Fernández; Yunyang Zhang; Ning Gao; John L Woolford; Jesús de la Cruz
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

3.  In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli.

Authors:  Masaru Shimojo; Kazuaki Amikura; Keiko Masuda; Takashi Kanamori; Takuya Ueda; Yoshihiro Shimizu
Journal:  Commun Biol       Date:  2020-03-25

Review 4.  Diversity and Similarity of Termination and Ribosome Rescue in Bacterial, Mitochondrial, and Cytoplasmic Translation.

Authors:  Andrei A Korostelev
Journal:  Biochemistry (Mosc)       Date:  2021-09       Impact factor: 2.487

5.  Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly.

Authors:  Jelena Micic; Yu Li; Shan Wu; Daniel Wilson; Beril Tutuncuoglu; Ning Gao; John L Woolford
Journal:  Nat Commun       Date:  2020-07-27       Impact factor: 14.919

6.  Structural snapshots of human pre-60S ribosomal particles before and after nuclear export.

Authors:  Xiaomeng Liang; Mei-Qing Zuo; Yunyang Zhang; Ningning Li; Chengying Ma; Meng-Qiu Dong; Ning Gao
Journal:  Nat Commun       Date:  2020-07-15       Impact factor: 14.919

7.  Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.

Authors:  Dushyant Jahagirdar; Vikash Jha; Kaustuv Basu; Josue Gomez-Blanco; Javier Vargas; Joaquin Ortega
Journal:  RNA       Date:  2020-09-28       Impact factor: 4.942

8.  Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.

Authors:  Anna B Loveland; Gabriel Demo; Andrei A Korostelev
Journal:  Nature       Date:  2020-07-01       Impact factor: 49.962

9.  Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling.

Authors:  Hauke S Hillen; Elena Lavdovskaia; Franziska Nadler; Elisa Hanitsch; Andreas Linden; Katherine E Bohnsack; Henning Urlaub; Ricarda Richter-Dennerlein
Journal:  Nat Commun       Date:  2021-06-16       Impact factor: 14.919

10.  A distinct assembly pathway of the human 39S late pre-mitoribosome.

Authors:  Jingdong Cheng; Otto Berninghausen; Roland Beckmann
Journal:  Nat Commun       Date:  2021-07-27       Impact factor: 14.919

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