Literature DB >> 29883016

Extending the Applicability of Exact Nuclear Overhauser Enhancements to Large Proteins and RNA.

Parker J Nichols1, Alexandra Born1, Morkos A Henen1,2, Dean Strotz3, Chi N Celestine4, Peter Güntert3,5,6, Beat Vögeli1.   

Abstract

Distance-dependent nuclear Overhauser enhancements (NOEs) are one of the most popular and important experimental restraints for calculating NMR structures. Despite this, they are mostly employed as semiquantitative upper distance bounds, and this discards the wealth of information that is encoded in the cross-relaxation rate constant. Information that is lost includes exact distances between protons and dynamics that occur on the sub-millisecond timescale. Our recently introduced exact measurement of the NOE (eNOE) requires little additional experimental effort relative to other NMR observables. So far, we have used eNOEs to calculate multistate ensembles of proteins up to approximately 150 residues. Here, we briefly revisit eNOE methodology and present two new directions for the use of eNOEs: applications to large proteins and RNA.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  NMR spectroscopy; RNA; dynamics; nuclear Overhauser effect; proteasomes

Year:  2018        PMID: 29883016     DOI: 10.1002/cbic.201800237

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  7 in total

1.  On the use of residual dipolar couplings in multi-state structure calculation of two-domain proteins.

Authors:  Alexandra Born; Morkos A Henen; Parker J Nichols; Beat Vögeli
Journal:  Magn Reson Lett       Date:  2021-11-02

2.  Nanobody Paratope Ensembles in Solution Characterized by MD Simulations and NMR.

Authors:  Monica L Fernández-Quintero; Eugene F DeRose; Scott A Gabel; Geoffrey A Mueller; Klaus R Liedl
Journal:  Int J Mol Sci       Date:  2022-05-12       Impact factor: 6.208

3.  Spectral editing of intra- and inter-chain methyl-methyl NOEs in protein complexes.

Authors:  Ricarda Törner; Rida Awad; Pierre Gans; Bernhard Brutscher; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2020-01-02       Impact factor: 2.835

4.  Using molecular dynamics trajectories to predict nuclear spin relaxation behaviour in large spin systems.

Authors:  Ilya Kuprov; Laura C Morris; John N Glushka; James H Prestegard
Journal:  J Magn Reson       Date:  2020-12-13       Impact factor: 2.229

5.  Reconstruction of Coupled Intra- and Interdomain Protein Motion from Nuclear and Electron Magnetic Resonance.

Authors:  Alexandra Born; Janne Soetbeer; Frauke Breitgoff; Morkos A Henen; Nikolaos Sgourakis; Yevhen Polyhach; Parker J Nichols; Dean Strotz; Gunnar Jeschke; Beat Vögeli
Journal:  J Am Chem Soc       Date:  2021-09-27       Impact factor: 16.383

6.  Protein Allostery at Atomic Resolution.

Authors:  Dean Strotz; Julien Orts; Harindranath Kadavath; Michael Friedmann; Dhiman Ghosh; Simon Olsson; Celestine N Chi; Aditya Pokharna; Peter Güntert; Beat Vögeli; Roland Riek
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-30       Impact factor: 16.823

7.  Reducing the measurement time of exact NOEs by non-uniform sampling.

Authors:  Parker J Nichols; Alexandra Born; Morkos A Henen; Dean Strotz; David N Jones; Frank Delaglio; Beat Vögeli
Journal:  J Biomol NMR       Date:  2020-09-03       Impact factor: 2.582

  7 in total

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