Literature DB >> 29881659

Cultivated methanotrophs associated with rhizospheres of traditional rice landraces from Western India belong to Methylocaldum and Methylocystis.

Monali C Rahalkar1, Sanjay Patil2, Prashant K Dhakephalkar1, Rahul A Bahulikar2.   

Abstract

Aerobic methanotrophs associated with Indian rice plants have rarely been cultivated. In the present study, we cultured aerobic methanotrophic bacteria from the rhizosphere regions of rice plants. Rhizospheric soils from seven rice landraces traditionally grown and maintained by tribal people in Jawhar region belonging to part of the Western Ghats in India, were used. Seven methanotrophic cultures were isolated from the last positive dilution (10- 4). Methanotrophs were identified by analyzing the partial methane monooxygenase gene, pmoA gene and three of these belonged to the genus Methylocaldum (gammaproteobacterial, Type I methanotrophs) and four belonged to the genus Methylocystis (alphaproteobacterial, Type II methanotrophs). We present here the first report on the cultivation of methanotrophs from Indian traditional rice landraces originating from a biodiversity hotspot.

Entities:  

Keywords:  Aerobic; Cultivation; Methane-oxidizing bacteria; Methanotrophs; PmoA; Rice landraces; Rice rhizosphere; Western Ghats

Year:  2018        PMID: 29881659      PMCID: PMC5984606          DOI: 10.1007/s13205-018-1306-z

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  20 in total

Review 1.  Methane as a resource: can the methanotrophs add value?

Authors:  P J Strong; S Xie; W P Clarke
Journal:  Environ Sci Technol       Date:  2015-03-10       Impact factor: 9.028

2.  Dry/Wet cycles change the activity and population dynamics of methanotrophs in rice field soil.

Authors:  Ke Ma; Ralf Conrad; Yahai Lu
Journal:  Appl Environ Microbiol       Date:  2013-06-14       Impact factor: 4.792

3.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

4.  Exospores and cysts formed by methane-utilizing bacteria.

Authors:  R Whittenbury; S L Davies; J F Davey
Journal:  J Gen Microbiol       Date:  1970-05

5.  Strain-specific incorporation of methanotrophic biomass into eukaryotic grazers in a rice field soil revealed by PLFA-SIP.

Authors:  Jun Murase; Kees Hordijk; Ichiro Tayasu; Paul L E Bodelier
Journal:  FEMS Microbiol Ecol       Date:  2010-12-06       Impact factor: 4.194

6.  Uncultivated Methylocystis Species in Paddy Soil Include Facultative Methanotrophs that Utilize Acetate.

Authors:  Lingqin Leng; Jiali Chang; Kan Geng; Yahai Lu; Ke Ma
Journal:  Microb Ecol       Date:  2014-12-05       Impact factor: 4.552

7.  Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids.

Authors:  Minita Shrestha; Wolf-Rainer Abraham; Pravin Malla Shrestha; Matthias Noll; Ralf Conrad
Journal:  Environ Microbiol       Date:  2007-12-19       Impact factor: 5.491

8.  Estimation of methanotroph abundance in a freshwater lake sediment.

Authors:  Andria M Costello; Ann J Auman; Jennifer L Macalady; Kate M Scow; Mary E Lidstrom
Journal:  Environ Microbiol       Date:  2002-08       Impact factor: 5.491

9.  A pmoA-based study reveals dominance of yet uncultured Type I methanotrophs in rhizospheres of an organically fertilized rice field in India.

Authors:  Pranitha S Pandit; Dilip R Ranade; Prashant K Dhakephalkar; Monali C Rahalkar
Journal:  3 Biotech       Date:  2016-06-16       Impact factor: 2.406

10.  Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.

Authors:  Matthew Shenton; Chie Iwamoto; Nori Kurata; Kazuho Ikeo
Journal:  Rice (N Y)       Date:  2016-08-24       Impact factor: 4.783

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