Literature DB >> 29881129

NON-LOCAL PRIORS FOR HIGH-DIMENSIONAL ESTIMATION.

David Rossell1, Donatello Telesca2.   

Abstract

Jointly achieving parsimony and good predictive power in high dimensions is a main challenge in statistics. Non-local priors (NLPs) possess appealing properties for model choice, but their use for estimation has not been studied in detail. We show that for regular models NLP-based Bayesian model averaging (BMA) shrink spurious parameters either at fast polynomial or quasi-exponential rates as the sample size n increases, while non-spurious parameter estimates are not shrunk. We extend some results to linear models with dimension p growing with n. Coupled with our theoretical investigations, we outline the constructive representation of NLPs as mixtures of truncated distributions that enables simple posterior sampling and extending NLPs beyond previous proposals. Our results show notable high-dimensional estimation for linear models with p ≫ n at low computational cost. NLPs provided lower estimation error than benchmark and hyper-g priors, SCAD and LASSO in simulations, and in gene expression data achieved higher cross-validated R2 with less predictors. Remarkably, these results were obtained without pre-screening variables. Our findings contribute to the debate of whether different priors should be used for estimation and model selection, showing that selection priors may actually be desirable for high-dimensional estimation.

Entities:  

Keywords:  Bayesian Model Averaging; MCMC; Model Selection; Non Local Priors; Shrinkage

Year:  2017        PMID: 29881129      PMCID: PMC5988374          DOI: 10.1080/01621459.2015.1130634

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  3 in total

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Journal:  Stat Sin       Date:  2010-01       Impact factor: 1.261

2.  Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation.

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Journal:  Cancer Cell       Date:  2012-11-13       Impact factor: 31.743

3.  Scalable Bayesian Variable Selection Using Nonlocal Prior Densities in Ultrahigh-dimensional Settings.

Authors:  Minsuk Shin; Anirban Bhattacharya; Valen E Johnson
Journal:  Stat Sin       Date:  2018-04       Impact factor: 1.261

  3 in total
  7 in total

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Authors:  Nilotpal Sanyal; Min-Tzu Lo; Karolina Kauppi; Srdjan Djurovic; Ole A Andreassen; Valen E Johnson; Chi-Hua Chen
Journal:  Bioinformatics       Date:  2019-01-01       Impact factor: 6.937

2.  Bayesian Sparse Mediation Analysis with Targeted Penalization of Natural Indirect Effects.

Authors:  Yanyi Song; Xiang Zhou; Jian Kang; Max T Aung; Min Zhang; Wei Zhao; Belinda L Needham; Sharon L R Kardia; Yongmei Liu; John D Meeker; Jennifer A Smith; Bhramar Mukherjee
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2021-09-12       Impact factor: 1.864

3.  Bayesian Factor Analysis for Inference on Interactions.

Authors:  Federico Ferrari; David B Dunson
Journal:  J Am Stat Assoc       Date:  2020-04-20       Impact factor: 5.033

4.  Prior Knowledge Guided Ultra-high Dimensional Variable Screening with Application to Neuroimaging Data.

Authors:  Jie He; Jian Kang
Journal:  Stat Sin       Date:  2022-10       Impact factor: 1.330

5.  Two-group Poisson-Dirichlet mixtures for multiple testing.

Authors:  Francesco Denti; Michele Guindani; Fabrizio Leisen; Antonio Lijoi; William Duncan Wadsworth; Marina Vannucci
Journal:  Biometrics       Date:  2020-06-28       Impact factor: 1.701

6.  Genomic Selection in Winter Wheat Breeding Using a Recommender Approach.

Authors:  Dennis N Lozada; Arron H Carter
Journal:  Genes (Basel)       Date:  2020-07-11       Impact factor: 4.096

7.  Comparing methods for statistical inference with model uncertainty.

Authors:  Anupreet Porwal; Adrian E Raftery
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-11       Impact factor: 12.779

  7 in total

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