| Literature DB >> 29877631 |
Shuai Zhang1, Junyu Luo1, Li Wang1, Lijuan Zhang1, Xiangzhen Zhu1, Weili Jiang1, Jinjie Cui1.
Abstract
The cotton-melon aphid, Aphis gossypii Glover, is a worldwide-spreading species, and pesticide-resistant populations are increasing rapidly. In this study, investigations were performed based on Illumina HiSeq sequencing of the 16S rDNA V4 region for the bacterial communities embodied as intracellular symbionts under natural and in pesticide-treated populations of A. gossypii. The results revealed that more than 82% of bacterial communities belonged to the phylum Proteobacteria in which the maximum proportion (53.24%) was of the genus Arsenophonus; Hamiltonella composed 22.31; and 1.37% was of the genus Acinetobacter. The relative abundance of Hamiltonella was obvious, vertically transmitted, divided into two groups, and its infection influenced the bacterial communities in A. gossypii. Symbiont density and composition were changed in samples tested on different days. Azadirachtin and phoxim influenced on the composition of bacterial communities. Different biomarkers were used for pesticide-treated samples with LEfSe results. These findings will increase awareness regarding bacterial communities in naturally occurring populations of A. gossypii and pave the way to study the relationship between symbionts and pesticide resistance.Entities:
Keywords: zzm321990Hamiltonellazzm321990; 16S rDNA; agroecological environment; associated bacteria; azadirachtin; cotton-melon aphid
Mesh:
Substances:
Year: 2018 PMID: 29877631 PMCID: PMC6436440 DOI: 10.1002/mbo3.652
Source DB: PubMed Journal: Microbiologyopen ISSN: 2045-8827 Impact factor: 3.139
Pesticide information in this study
| Pesticide (concentration) | Formulation | Dosage | Company |
|---|---|---|---|
| Deltamethrin (25 g/L) | EC | 450 ml/hm2 | Bayer Crop Science (China) Co., Ltd |
| Phoxim (40%) | EC | 450 ml/hm2 | Lianyungang Liben crop science and Technology Co., Ltd |
| Azadirachtin (100%) | / | 90 g/hm2 | Xi'an Realin Biotechnology Co., Ltd |
| Imidacloprid (10%) | WP | 225 g/hm2 | Jiangsu KWIN Group |
| Carbosulfan (20%) | EC | 225 ml/hm2 | Shandong Sino‐Agri United Biotechnology Co., Ltd |
EC, emulsifiable concentrate; WP, wettable powder.
Sequencing analysis of 16S rDNA of Aphis gossypii with diversity indices in each treatment
| Treatment name | Treatment time (d) | Total reads | Clean reads | OTU number | Observed species | Shannon | Simpson | Chao1 | Goods coverage |
|---|---|---|---|---|---|---|---|---|---|
| Control | 0 | 151,802 | 150,816 | 310 | 310 | 1.22 | 0.36 | 481.59 | 1.00 |
| 3 | 162,209 | 161,147 | 270 | 206 | 0.80 | 0.19 | 235.00 | 1.00 | |
| 7 | 165,958 | 164,615 | 1,631 | 1,379 | 3.48 | 0.69 | 1722.73 | 1.00 | |
| Azadirachtin | 0 | 175,807 | 174,467 | 1,178 | 973 | 1.87 | 0.40 | 1214.37 | 1.00 |
| 3 | 163,254 | 162,211 | 276 | 206 | 1.33 | 0.40 | 249.33 | 1.00 | |
| 7 | 151,671 | 150,444 | 1,266 | 1,135 | 3.49 | 0.73 | 1247.22 | 1.00 | |
| Carbosulfan | 0 | 137,579 | 136,384 | 1,506 | 1,349 | 3.07 | 0.55 | 1514.82 | 1.00 |
| 3 | 194,290 | 193,040 | 478 | 364 | 0.98 | 0.24 | 506.92 | 1.00 | |
| 7 | 145,628 | 144,637 | 517 | 460 | 3.06 | 0.77 | 495.13 | 1.00 | |
| Deltamethrin | 0 | 194,026 | 192,850 | 400 | 309 | 1.19 | 0.36 | 444.34 | 1.00 |
| 3 | 145,601 | 144,686 | 283 | 224 | 1.25 | 0.37 | 263.76 | 1.00 | |
| 7 | 155,283 | 153,899 | 1,981 | 1,751 | 4.03 | 0.68 | 1918.29 | 1.00 | |
| Imidacloprid | 0 | 162,818 | 161,677 | 1,264 | 1,060 | 1.74 | 0.35 | 1217.80 | 1.00 |
| 3 | 191,471 | 190,161 | 434 | 333 | 1.84 | 0.54 | 400.80 | 1.00 | |
| 7 | 151,407 | 150,106 | 1,040 | 954 | 3.95 | 0.79 | 1024.14 | 1.00 | |
| Phoxim | 0 | 180,764 | 179,574 | 375 | 296 | 1.92 | 0.63 | 344.12 | 1.00 |
| 3 | 172,909 | 171,790 | 264 | 192 | 0.84 | 0.21 | 277.41 | 1.00 | |
| 7 | 155,166 | 153,750 | 1,014 | 863 | 2.02 | 0.42 | 987.54 | 1.00 |
OTUs (operational taxonomic units) were defined with pairwise 97% sequence identity.
Figure 1Associated bacteria in Aphis gossypii before pesticide application. Average relative abundance of bacterial operational taxonomic units (OTUs) identified across the 18 species before pesticide application on aphid samples at different levels (a) and enlarged part of the low abundance associated bacteria in A. gossypii (b). P: phylum‐level; C: class‐level; O: order‐level; F: family‐level; G: genus‐level
Figure 2Top 10 most abundant associated bacteria in A. gossypii with different pesticides treatment. The abundance values of the OTUs were analyzed at the genus‐level across the pesticides and the control at the genus‐level. BLK0, BLK3, BLK7: used water as a control treatment plot before treatment and after treatment 3 and 7 days; AZ0, AZ3, AZ7: before application of azadirachtin and after application of azadirachtin 3 and 7 days; CA0, CA3, CA7: before application of carbosulfan and after application of carbosulfan 3 and 7 days; DM0, DM3, DM7: before application of deltamethrin and after application of deltamethrin 3 and 7 days; IM0, IM3, IM7: before application of imidacloprid and after application of imidacloprid 3 and 7 days; PH0, PH3, PH7: before application of phoxim and after application of phoxim 3 and 7 days
Figure 3The relative abundance of Hamiltonella in A. gossypii samples. The 54 aphid populations were divided into two groups (as blue cycle show) by relative abundance of Hamiltonella. One group was composed of eight highly abundant populations, and another group has low relative abundance. “**”: one‐way ANOVA analysis use arcsin square root transformed data with SPSS 20.0, p < 0.01
Figure 4Pesticide treatment effects on bacterial diversity at the genus‐level. Total symbiont: both Buchnera primary symbionts and associated bacteria were included in the data analysis. Associated bacteria: only associated bacteria were included in the data analysis. Linear discriminant analysis (LDA) effect size (LEfSe) was used to identify specific phylotypes that were significantly associated with treatments at the genus‐level. An LDA more than two reflects significant differences between the groups. LEfSe analysis provided the list of phylotypes that are differential among dietary supplementations with statistical and biological significance