Literature DB >> 29876808

Methods for Genomic Characterization and Maintenance of Anaerobic Fungi.

Xuefeng Peng1, Candice L Swift1, Michael K Theodorou2, Michelle A O'Malley3.   

Abstract

The rapid development of molecular biology and bioinformatics has fueled renewed interests in anaerobic fungi from the phylum Neocallimastigomycota. This chapter presents well-established methods for isolation, routine cultivation, and cryopreservation of anaerobic fungi. Moreover, detailed nucleic acid extraction protocols are provided, which should enable readers to isolate high-quality DNA and RNA from a variety of anaerobic fungal culture media for downstream applications such as next-generation sequencing.

Keywords:  Anaerobic fungi; Consecutive batch culture; Cultivation; DNA extraction; Genomes; Isolation; Neocallimastigomycota; Next-generation sequencing; RNA extraction; Transcriptomes

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Substances:

Year:  2018        PMID: 29876808     DOI: 10.1007/978-1-4939-7804-5_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture.

Authors:  Patrick A Leggieri; Corey Kerdman-Andrade; Thomas S Lankiewicz; Megan T Valentine; Michelle A O'Malley
Journal:  Microb Cell Fact       Date:  2021-10-18       Impact factor: 5.328

2.  Roughage biodegradation by natural co-cultures of rumen fungi and methanogens from Qinghai yaks.

Authors:  Yaqin Wei; Hui Yang; Zhiye Wang; Jiang Zhao; Hongshan Qi; Chuan Wang; Jingrong Zhang; Tao Yang
Journal:  AMB Express       Date:  2022-09-19       Impact factor: 4.126

3.  No time to die: Comparative study on preservation protocols for anaerobic fungi.

Authors:  Julia Vinzelj; Akshay Joshi; Diana Young; Ljubica Begovic; Nico Peer; Lona Mosberger; Katharina Cécile Schmid Luedi; Heribert Insam; Veronika Flad; Magdalena Nagler; Sabine Marie Podmirseg
Journal:  Front Microbiol       Date:  2022-09-26       Impact factor: 6.064

  3 in total

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