| Literature DB >> 29876695 |
Jörn Lötsch1,2, Reetta Sipilä3, Tiina Tasmuth3, Dario Kringel4, Ann-Mari Estlander3, Tuomo Meretoja5, Eija Kalso3, Alfred Ultsch6.
Abstract
BACKGROUND: Prevention of persistent pain following breast cancer surgery, via early identification of patients at high risk, is a clinical need. Supervised machine-learning was used to identify parameters that predict persistence of significant pain.Entities:
Keywords: Bioinformatics; Chronification; Data science; Pain
Mesh:
Year: 2018 PMID: 29876695 PMCID: PMC6096884 DOI: 10.1007/s10549-018-4841-8
Source DB: PubMed Journal: Breast Cancer Res Treat ISSN: 0167-6806 Impact factor: 4.872
Fig. 1Flow chart showing the classification of the patients on the basis of the 3-year development of pain following breast cancer surgery. A total of 853 women fell into the two main groups of persisting or non-persisting pain, according to the criteria displayed in the gray-shaded frames. This was the main cohort that was analyzed. The remaining 143 women in whom the criteria for class assignment applied only partly were therefore excluded from machine-learned classifier establishment but they were used as an exploratory shortened “test” data set. Incomplete returns of pain questionnaires were dealt with by imputation as detailed in the methods section
Fig. 2Flow chart of the data analysis. The figure provides an overview on the applied machine-learning approach in four steps (indicated in blue: output space preparation, input space feature pre-selection, feature selection and classifier building, including validation). The white frames show the variable flow; the gray frames depict the bioinformatics operation applied on the variables. During feature pre-selection and feature selection, the number of candidate variables qualifying as component s of a diagnostic tool respectively classifier was stepwise reduced (initially 542, finally 21), forwarding to the next analytical step only those features that had passed the criteria of the actual selection procedure. The Bayesian decision limit and Kullback–Leibler divergence refer to the respective standard procedure presented elsewhere [28, 35]
Fig. 3Performance of the continuous variables with a Bayesian decision boundary in 1,000 repeated cross-validations. The n = 17 continuous variables were subjected to an ABC analysis (for ABC analysis, see [56]). The set A (best performers) was characterized by a sensitivity · specificity > 40% (threshold; magenta line). The resulting 6 variables in set A were included in the classifier construction. Names of variables above the threshold: Age, BMI, BDI0 = preoperative BDI, BDI1 = BDI at 1 month after surgery, BDI2 = BDI at 6 months after surgery, STAI0A, STAI1A, STAI2A = State anxiety (STAI) aquired preoperatively and at 1 month and 6 months after surgery, respectively, STAI0B, STAI1B, STAI2B = Trait anxiety (STAI) aquired preoperatively and at 1 and 6 months postoperatively, respectively, STAXI = Anger inhibition (STAXI)
Parameters (predictive factors) for persisting pain following breast cancer surgery
| Number | Category | Parameters (predictive factors) | Threshold |
|---|---|---|---|
| 1 | Demographic factors | Age | > 62 |
| 2 | BMI | > 31.5 | |
| 3 | Psychological factors | Depressive symptoms (BDI) | > 11 |
| 4 | State anxiety (STAI) | > 35 | |
| 5 | Trait anxiety (STAI) | > 37 | |
| 6 | Anger inhibition (STAXI) | > 12 | |
| 7 | Pain-related factors | Have the pains in the extremities *affected your life? | > 1.5 |
| 8 | Have the pains in the axilla affected your life? | > 0.5 | |
| 9 | Have the pains in the hand or fingers affected your life? | > 0.5 | |
| 10 | Have the pains in the joints affected your life? | > 0.5 | |
| 11 | Have the pains in the lower arm affected your life? | > 0.5 | |
| 12 | Have the pains in the upper arm affected your life? | > 0.5 | |
| 13 | How much has the pain disturbed your sleep? | > 0.5 | |
| 14 | How much has the pain disturbed your sleep? | > 0.5 | |
| 15 | How much has the pain in the axilla disturbed your sleep? | > 0.5 | |
| 16 | How much has the pain in the breast disturbed your sleep? | > 0.5 | |
| 17 | Pain intensity in the operated-side arm and axilla in the morning? | > 2.5 | |
| 18 | Worst pain intensity during the past week at one month | > 1.5 | |
| 19 | Worst pain intensity during the past week at 6 months | > 0.5 | |
| 20 | Worst pain intensity during the past week in the operated breast? | > 1.5 | |
| 21 | Worst pain intensity during the past week somewhere? | > 1.5 | |
| All | “Persistent pain” class if sum of positively answered items ≥ 10 | ||
A patient is likely to develop persistent pain if at least 10 of the 21 items (rules) apply
BMI body mass index, BDI Beck’s Depression Inventory, STAI Spielberger’s State-Trait Anxiety Inventory, STAXI Spielberger’s State-Trait Anger Expression Inventory, m months
Fig. 4Plot of the specificity versus the sensitivity of using all possible combinations and thresholds for the 21 candidate predictors of persistent pain after breast cancer surgery (classifier construction). The number of conditions for a positive classification into the “persisting pain” groups ranges from n = 1–20 conditions. For all of these positive conditions, the sensitivity, specificity, and the area under the curve (AUC = sensitivity · specificity) was calculated. The red dots in the figure show AUC versus sensitivity. The black numbers close to the red dots indicate the number of conditions to be true according to the questions in Table 2. The maximum AUC, i.e., the best number of conditions for a classifier, was obtained with at least 10 positive items from Table 2, which was the result of the analysis shown in this figure and the reason why the final predictive tool required 10 or more positive items. The blue dots in the blue line indicate the corresponding specificity (ordinate) versus sensitivity (abscissa) values. The lines have been drawn to enhance visibility and are spline interpolations
Parameter list including original features along with the details of feature aggregation
| Number | Parameters (features) | Time | Body location | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Preoperative | Week 1 | Week 4 | Week 24 | Breast | Axilla | Upper arm | Joints | Lower arm | Hand/fingers | Operated side arm | Somewhere | ||
| 1 | Age | X | |||||||||||
| 2 | BMI | X | |||||||||||
| 3 | Depressive symptoms (BDI) | X | |||||||||||
| 4 | State anxiety (STAI) | X | |||||||||||
| 5 | Trait anxiety (STAI) | X | |||||||||||
| 6 | Anger inhibition (STAXI-2) | X | |||||||||||
| 7 | Have the pains in the extremities* affected your life? | X | X | X | X | X | X | ||||||
| 8 | Have the pains in the axilla affected your life? | X | X | X | X | ||||||||
| 9 | Have the pains in the hand or fingers affected your life? | X | X | X | X | ||||||||
| 10 | Have the pains in the joints affected your life? | X | X | X | X | ||||||||
| 11 | Have the pains in the lower arm affected your life? | X | X | X | X | ||||||||
| 12 | Have the pains in the upper arm affected your life? | X | X | X | X | ||||||||
| 13 | How much has the pain disturbed your sleep? | X | |||||||||||
| 14 | How much has the pain disturbed your sleep? | X | |||||||||||
| 15 | How much has the pain in the axilla disturbed your sleep? | X | X | X | |||||||||
| 16 | How much has the pain in the breast disturbed your sleep? | X | X | X | |||||||||
| 17 | Pain intensity in the operated-side arm and axilla in the morning? | X | X | X | X | ||||||||
| 18 | Worst pain intensity during the past week at one month | X | X | X | X | X | X | X | |||||
| 19 | Worst pain intensity during the past week at 6 months | X | X | X | X | X | X | X | |||||
| 20 | Worst pain intensity during the past week in the operated breast? | X | X | X | |||||||||
| 21 | Worst pain intensity during the past week somewhere? | X | X | X | |||||||||
The table specifies the time points and, if applicable, the targeted body locations for several questions the patients are asked following surgery. Specifically, for the pain-related parameters #7 - #21 (according to the numbering in the left column), patients were asked about how the pain affected their lives or sleep. These questions were asked at several times (week 1, 4, and 24 after surgery) and for several specific body locations (breast, axilla, upper arm, joints, lower arm, hand, arm on operation side, elsewhere) indicated in the middle block of the table. The “X”s indicate which ratings were averaged to obtain the parameters
*Extremities: aggregated parameters across axilla, upper arm, lower arm, hand/fingers, and the associated joints