Literature DB >> 29876378

Molecular and morphological data to facilitate future research on freshwater mussels (Bivalvia: Unionidae: Anodontinae).

Chase H Smith1, Nathan A Johnson1, John M Pfeiffer2, Michael M Gangloff3.   

Abstract

This data article presents the multi-locus DNA alignments, morphometric data, and details on specimens examined to resolve the evolutionary history of Anodontoides and Strophitus, primarily generic placement and species boundaries. We sequenced 3 loci to create our molecular matrix: cytochrome c oxidase subunit I, NADH dehydrogenase subunit I, and the nuclear-encoded ribosomal internal transcribed spacer I. Aligned sequences were used in phylogenetic analyses and to identify diagnostic nucleotides for Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi. Linear morphometrics (i.e. maximum height, length, and width) were also implemented to further evaluate species boundaries within Strophitus. For further details and experimental findings, please refer to the article published in Molecular Phylogenetics and Evolution (Smith et al., 2018) [1].

Entities:  

Keywords:  Linear morphometric data; Multi-locus sequence data; Species boundaries; Strophitus

Year:  2018        PMID: 29876378      PMCID: PMC5988452          DOI: 10.1016/j.dib.2017.12.050

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


Specifications Table Value of the data Provided sequence data and alignments can be directly utilized in future phylogenetic studies on freshwater mussels (Bivalvia: Unionidae). All data are tied to museum vouchers, ensuring repeatability of results and facilitating further investigation of additional DNA loci and morphological characters on the same specimens used in our study. Sequence data are available to confirm species-level identification of existing museum specimens or samples collected during future field surveys. Molecular and morphological data provides insight on cryptic diversity within Strophitus radiatus, including diagnostic nucleotides that distinguish species within this complex.

Data

We present multi-locus sequence data for 97 individuals representing 18 species of North American freshwater mussels (Bivalvia: Unionidae) belonging to the subfamily Anodontinae. We also provide shell measurements (max length, width, and height) taken from 142 specimens used to evaluate morphological differences between Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi. Our molecular matrix can be used as a tool for confirming identification of vouchered or field collected specimens. Additionally, by depositing vouchered specimens and providing full access to our DNA alignment files, morphometric measurements, and specimen collection information, our data provide a valuable resource for future research on freshwater mussel systematics, distribution, and conservation.

Experimental design, materials and methods

Molecular data collection

Our taxon sampling focused on North American freshwater mussels in the subfamily Anodontinae (Table 1). We sequenced two mitochondrial genes and one nuclear gene for phylogenetic analyses: the protein-coding mitochondrial genes cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit I (NDI), and the nuclear-encoded ribosomal internal transcribed spacer I (ITSI). Tissue samples were preserved in 95% ethanol and DNA was isolated using a modified plate extraction protocol [2]. Primers used for polymerase chain reaction (PCR) and sequencing were: COI dgLCO-1490—GGTCAACAAATCATAAAGAYATYGG and COI dgHCO-2198—TAAACTTCAGGGTGACCAAARAAYCA [3]; NDI Leu-uurF- TGGCAGAAAAGTGCATCAGATTAAAGC and LoGlyR—CCTGCTTGGAAGGCAAGTGTACT [4]; ITSI-18S—AAAAAGCTTCCGTAGGTGAACCTGCG and ITSI-5.8 S—AGCTTGCTGCGTTCTTCATCG [5]. PCR amplifications were conducted using a 25 µl mixture of the following: distilled deionized water (9.5 µl), GoTaq GMM (12.5 µl) (Green Master Mix, Promega Corporation), primers (0.5 µl each) and DNA template (40 ng). Product was sent to the Interdisciplinary Center for Biotechnology Research at the University of Florida for bi-directional sequencing on an ABI 3730.
Table 1

Specimens and loci used in Smith et al. (2018) [1]. Taxon identifiers, museum catalog numbers, and Genbank accession numbers for all molecular loci included in the 3-gene concatenated dataset are provided. Museum abbreviations are as follows: UF (Florida Museum of Natural History); MMNS (Mississippi Museum of Natural Sciences); ASU (Appalachian State University).

TaxaCatalog NumberLatitudeLongitudeCOINDIISTI
Alasmidonta triangulataUF441077.00231.00521−84.52261MG199612MG199739MG199866
Anodonta couperianaUF440939.01129.060006−81.382914MG199596MG199723MG199850
Anodonta hartfieldorumUF441275.03830.8555−87.31268MG199623MG199750MG199877
Anodonta heardi 1UF438379.00630.12246−85.14376MG199610MG199737MG199864
Anodonta heardi 2UF441265.01231.74566−85.12909MG199622MG199749MG199876
Anodonta suborbiculataMMNS1016331.221928−91.538085MG199598MG199725MG199852
Anodontoides ferussacianus 1MG199685MG199812MG199939
Anodontoides ferussacianus 2MG199686MG199813MG199940
Anodontoides ferussacianus 3MG199687MG199814MG199941
Anodontoides ferussacianus cf. denigrata 1UF438162.00136.61645−84.02003MG199637MG199764MG199891
Anodontoides ferussacianus cf. denigrata 2UF438162.00236.61645−84.02003MG199638MG199765MG199892
Anodontoides ferussacianus cf. denigrata 3UF438162.00336.61645−84.02003MG199639MG199766MG199893
Anodontoides ferussacianus cf. denigrata 4UF438163.00436.60361−84.04476MG199640MG199767MG199894
Anodontoides ferussacianus cf. denigrata 5UF438163.00536.60361−84.04476MG199641MG199768MG199895
Anodontoides ferussacianus cf. denigrata 6UF438163.00636.60361−84.04476MG199642MG199769MG199896
Cristaria plicataKM233451KM233451EU580111
Lasmigona etowaensis 1UF438474.00334.25786−85.30144MG199611MG199738MG199865
Lasmigona etowaensis 2UF438188.606833.98492−85.08266MG199651MG199778MG199905
Pseudodontoideus connasaugaensis 1UF438199.00133.72361−85.59901MG199662MG199789MG199916
Pseudodontoideus connasaugaensis 2UF438199.00233.72361−85.59901MG199663MG199790MG199917
Pseudodontoideus connasaugaensis 3UF438199.00333.72361−85.59901MG199664MG199791MG199918
Pseudodontoideus connasaugaensis 4UF438199.00533.72361−85.59901MG199665MG199792MG199919
Pseudodontoideus subvexus 1UF438164.00233.68795−87.66486MG199643MG199770MG199897
Pseudodontoideus subvexus 2UF438195.609233.00305−87.75356MG199659MG199786MG199913
Pseudodontoideus subvexus 3UF438195.609433.00305−87.75356MG199660MG199787MG199914
Pseudodontoideus subvexus 4UF438195.609533.00305−87.75356MG199661MG199788MG199915
Pseudodontoideus subvexus 5UF438194.608234.11203−87.73093MG199654MG199781MG199908
Pseudodontoideus subvexus 6UF438194.608534.11203−87.73093MG199655MG199782MG199909
Pseudodontoideus subvexus 7UF438194.608634.11203−87.73093MG199656MG199783MG199910
Pseudodontoideus subvexus 8UF438194.609034.11203−87.73093MG199657MG199784MG199911
Pseudodontoideus subvexus 9UF438194.609134.11203−87.73093MG199658MG199785MG199912
Pseudodontoideus subvexus 10UF438201.612132.36612−88.41522MG199671MG199798MG199925
Pyganodon grandis 1UF441315.04231.35521−85.08589MG199624MG199751MG199878
Pyganodon grandis 2UF438033.04330.85467−87.31101MG199625MG199752MG199879
Strophitus pascagoulaensis 1UF438202.612932.26286−88.56979MG199672MG199799MG199926
Strophitus pascagoulaensis 2UF438202.613032.26286−88.56979MG199673MG199800MG199927
Strophitus pascagoulaensis 3UF43932232.26286−88.56979MG199674MG199801MG199928
Strophitus pascagoulaensis 4UF438202.612332.26286−88.56979MG199711MG199838
Strophitus pascagoulaensis 5UF438202.612432.26286−88.56979MG199712MG199839
Strophitus pascagoulaensis 6UF438202.612532.26286−88.56979MG199713MG199840
Strophitus pascagoulaensis 7UF438202.612632.26286−88.56979MG199714MG199841
Strophitus pascagoulaensis 8UF438202.612732.26286−88.56979MG199715MG199842
Strophitus pascagoulaensis 9UF438202.612832.26286−88.56979MG199716MG199843
Strophitus pascagoulaensis 10UF438202.613132.26286−88.56979MG199717MG199844
Strophitus radiatus 1UF438206.613934.818−89.05283MG199676MG199803MG199930
Strophitus radiatus 2UF438206.614034.818−89.05283MG199677MG199804MG199931
Strophitus radiatus 3UF438880.01132.949566−87.96215MG199608MG199735MG199862
Strophitus radiatus 4UF438880.01232.949566−87.96215MG199609MG199736MG199863
Strophitus radiatus 5UF438200.610832.36612−88.41522MG199666MG199793MG199920
Strophitus radiatus 6UF438200.611132.36612−88.41522MG199667MG199794MG199921
Strophitus radiatus 7UF438200.611332.36612−88.41522MG199668MG199795MG199922
Strophitus radiatus 8UF438200.611932.36612−88.41522MG199669MG199796MG199923
Strophitus radiatus 9UF438200.612032.36612−88.41522MG199670MG199797MG199924
Strophitus radiatus 10UF438160.03234.11203−87.73093MG199632MG199759MG199886
Strophitus radiatus 11UF438795.00533.76028−87.6104MG199599MG199726MG199853
Strophitus radiatus 12UF438167.04333.00305−87.75356MG199647MG199774MG199901
Strophitus radiatus 13UF438167.04433.00305−87.75356MG199648MG199775MG199902
Strophitus radiatus 14UF438167.04633.00305−87.75356MG199649MG199776MG199903
Strophitus radiatus 15UF438167.04833.00305−87.75356MG199650MG199777MG199904
Strophitus radiatus 16UF438165.04132.01874−85.29579MG199646MG199773MG199900
Strophitus radiatus 17UF438207.614132.3789−85.1818MG199678MG199805MG199932
Strophitus radiatus 18UF438165.03932.01874−85.29579MG199644MG199771MG199898
Strophitus radiatus 19UF438165.04032.01874−85.29579MG199645MG199772MG199899
Strophitus radiatus 20UF441078.00631.069118−85.405MG199601MG199728MG199855
Strophitus radiatus 21UF441078.00731.069118−85.405MG199602MG199729MG199856
Strophitus radiatus 22UF441078.00831.069118−85.405MG199603MG199730MG199857
Strophitus radiatus 23UF441131.00931.074716−85.218983MG199604MG199731MG199858
Strophitus radiatus 24UF438197.01032.20303341−84.41530078MG199605MG199732MG199859
Strophitus radiatus 25ASU5224.985731.92777−87.01426MG199689MG199816MG199943
Strophitus radiatus 26ASU5224.985631.92777−87.01426MG199721MG199848
Strophitus radiatus 27ASU5224.985831.92777−87.01426MG199722MG199849
Strophitus radiatus 28UF438167.04233.00305−87.75356MG199698MG199825
Strophitus radiatus 29UF438167.04533.00305−87.75356MG199699MG199826
Strophitus radiatus 30UF438167.04733.00305−87.75356MG199700MG199827
Strophitus radiatus 31UF438167.04933.00305−87.75356MG199701MG199828
Strophitus radiatus 32UF438167.05033.00305−87.75356MG199702MG199829
Strophitus radiatus 33UF438200.610932.36612−88.41522MG199703MG199830
Strophitus radiatus 34UF438200.611032.36612−88.41522MG199704MG199831
Strophitus radiatus 35UF438200.611232.36612−88.41522MG199705MG199832
Strophitus radiatus 36UF438200.611432.36612−88.41522MG199706MG199833
Strophitus radiatus 37UF438200.611532.36612−88.41522MG199707MG199834
Strophitus radiatus 38UF438200.611632.36612−88.41522MG199708MG199835
Strophitus radiatus 39UF438200.611732.36612−88.41522MG199709MG199836
Strophitus radiatus 40UF438200.611832.36612−88.41522MG199710MG199837
Strophitus radiatus 41UF438210.614534.75669−89.14737MG199719MG199846
Strophitus radiatus 42UF441279.01531.105616667−85.25436667MG199692MG199819
Strophitus sp. cf. pascagoulaensis 1UF43887732.10864−90.21003MG199600MG199727MG199854
Strophitus sp. cf. pascagoulaensis 2UF438205.613731.23189−90.86655MG199675MG199802MG199929
Strophitus sp. cf. pascagoulaensis 3UF438205.613831.23189−90.86655MG199691MG199818MG199945
Strophitus sp. cf. pascagoulaensis 4UF438205.613631.23189−90.86655MG199718MG199845
Strophitus undulatus 1UF438191.506330.65781−99.32435MG199626MG199753MG199880
Strophitus undulatus 2UF438744.665030.658673−99.3245MG199681MG199808MG199935
Strophitus undulatus 3UF438744.665130.658673−99.3245MG199682MG199809MG199936
Strophitus undulatus 4UF438744.665330.658673−99.3245MG199683MG199810MG199937
Strophitus undulatus 5UF438744.665430.658673−99.3245MG199684MG199811MG199938
Strophitus undulatus 6UF438193.607736.13527−83.20188MG199652MG199779MG199906
Strophitus undulatus 7UF438193.607836.13527−83.20188MG199653MG199780MG199907
Strophitus undulatus 8ASU5186.985535.688−79.94872MG199688MG199815MG199942
Strophitus undulatus 9ASU5185.985935.9367−78.149408MG199690MG199817MG199944
Strophitus williamsi 1UF438158.02431.58155−86.91755MG199627MG199754MG199881
Strophitus williamsi 2UF438158.02631.58155−86.91755MG199628MG199755MG199882
Strophitus williamsi 3UF438158.02731.58155−86.91755MG199629MG199756MG199883
Strophitus williamsi 4UF438158.02831.58155−86.91755MG199630MG199757MG199884
Strophitus williamsi 5UF438159.03131.30133−87.01215MG199631MG199758MG199885
Strophitus williamsi 6UF438158.646431.58155−86.91755MG199679MG199806MG199933
Strophitus williamsi 7UF438158.646531.58155−86.91755MG199680MG199807MG199934
Strophitus williamsi 8UF438713.00431.043−86.1013MG199597MG199724MG199851
Strophitus williamsi 9UF438161.03331.10979−86.14611MG199633MG199760MG199887
Strophitus williamsi 10UF438161.03431.10979−86.14611MG199634MG199761MG199888
Strophitus williamsi 11UF438161.03531.10979−86.14611MG199635MG199762MG199889
Strophitus williamsi 12UF438161.03831.10979−86.14611MG199636MG199763MG199890
Strophitus williamsi 13UF441102.01330.61419−86.01275MG199613MG199740MG199867
Strophitus williamsi 14UF441102.01430.61419−86.01275MG199614MG199741MG199868
Strophitus williamsi 15UF441102.01530.61419−86.01275MG199615MG199742MG199869
Strophitus williamsi 16UF441102.01630.61419−86.01275MG199616MG199743MG199870
Strophitus williamsi 17UF441102.01730.61419−86.01275MG199617MG199744MG199871
Strophitus williamsi 18UF43931930.61419−86.01275MG199618MG199745MG199872
Strophitus williamsi 19UF441102.01930.61419−86.01275MG199619MG199746MG199873
Strophitus williamsi 20UF441102.02030.61419−86.01275MG199620MG199747MG199874
Strophitus williamsi 21UF441102.02130.61419−86.01275MG199621MG199748MG199875
Strophitus williamsi 22UF438161.03631.10979−86.14611MG199696MG199823
Strophitus williamsi 23UF438161.03731.10979−86.14611MG199697MG199824
Strophitus williamsi 24UF438158.02531.58155−86.91755MG199693MG199820
Strophitus williamsi 25UF438158.02931.58155−86.91755MG199694MG199821
Strophitus williamsi 26UF438158.03031.58155−86.91755MG199695MG199822
Strophitus williamsi 27UF438158.646331.58155−86.91755MG199720MG199847
Utterbackia peggyae 1UF441117.04030.48789−84.39746MG199606MG199733MG199860
Utterbackia peggyae 2UF441117.04130.48789−84.39746MG199607MG199734MG199861
Specimens and loci used in Smith et al. (2018) [1]. Taxon identifiers, museum catalog numbers, and Genbank accession numbers for all molecular loci included in the 3-gene concatenated dataset are provided. Museum abbreviations are as follows: UF (Florida Museum of Natural History); MMNS (Mississippi Museum of Natural Sciences); ASU (Appalachian State University).

Molecular data processing

Chromatograms were assembled and edited in Geneious v 6.1.2 [6] and consensus sequences were aligned in Mesquite v 3.1.0 [7] using MAFFT v 7.299 [8]. The mtDNA protein coding genes COI and NDI were aligned then translated into amino acids to ensure absence of gaps and stop codons. The ITSI alignment was performed using the default parameters in MAFFT and minor adjustments were made by eye where necessary. Independent alignment files (phylip format) for COI, NDI, and ITSI are available in supplemental information (Supplemental_File_1_All_COI.phy; Supplemental_File_2_All_NDI.phy; Supplemental_File_3_All_ITSI.phy). Diagnostic nucleotides within S. pascagoulaensis, S. radiatus, S. sp. cf. pascagoulaensis, and S. williamsi were identified using MEGA6 [9]. COI, NDI, and ITSI were independently analyzed (including redundant haplotypes) and groups were determined by species: S. pascagoulaensis, S. radiatus, S. sp. cf. pascagoulaensis, and S. williamsi. We used the mitochondrial genome sequence of Cristaria plicata (GenBank Accession: KM233451) to determine nucleotide positions for COI and NDI. Base pair positions at ITSI were determined by using an alignment consisting of only A. radiatus (Supplemental_File_4_A_radiatus_ITSI.phy). We used the sequence of our only A. radiatus from the Pearl River as a reference (Genbank accession number MG199854). Diagnostic nucleotides are provided in Table 2.
Table 2

Diagnostic nucleotides referenced in Smith et al. (2018) [1] for Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi with indication of whether the substitution changed the amino acid translation.

GenePositionS. pascagoulaensisS. radiatusS. sp cf. pascagoulaensisS. williamsiAmino Acid Change (Y/N)
CO152AACAN
CO1144CCTCN
CO1222AGGGN
CO1261GGGAN
CO1267AGGGN
CO1276TTCTN
CO1291GGAGN
CO1300AAAGN
CO1336TTGTN
CO1342GAGGN
CO1363TTTGN
CO1375AGGGN
CO1408TTCTN
CO1411GGGAN
CO1429CTTTN
CO1459TTGTN
CO1471CTTTN
CO1498GAAAN
CO1540AAGAN
CO1568AGGGY
CO1570AGAAN
CO1571CTTTN
CO1573AGAAN
CO1576AAGAN
CO1579TTCTN
CO1612AAAGN
CO1627TCCCN
CO1657GTTTN
CO1663GG/TGAN
ND110CTCCY
ND123CCTCY
ND124TTTCN
ND125CCACY
ND126TTCTY
ND127TTCTN
ND139CCTCN
ND140TTCTN
ND163TTCTN
ND190TTTCN
ND1120CTCCN
ND1123GGGAN
ND1162CCTCN
ND1177CTCCN
ND1188TCTTY
ND1231GTGAN
ND1264AAGAN
ND1273CCCTN
ND1297AAGAN
ND1304AC/TCCY
ND1318GAAAN
ND1326GGGCY
ND1327CTTTN
ND1370GGAGY
ND1396GGAGN
ND1411CTTTN
ND1423AAAGN
ND1432CTTTN
ND1466TCCCN
ND1468AAGAN
ND1471TC/ACCN
ND1477AATAN
ND1486GAAAN
ND1489CCCTN
ND1532GAGGY
ND1555GAAAN
ND1565AGGGY
ND1576CTTTN
ND1612GGAGN
ND1642CCTCN
ND1700ATTTY
ND1745GAAAY
ND1749TCTTY
ND1750AGGGN
ND1766AAGAY
ND1768TTTCN
ND1770CCTCY
ITS152AT/-T/-n/a
ITS153AAAn/a
ITS156CA/TGAn/a
ITS1406GAAAn/a
Diagnostic nucleotides referenced in Smith et al. (2018) [1] for Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi with indication of whether the substitution changed the amino acid translation.

Morphological data collection

We conducted linear morphometrics of external shell dimensions for all S. pascagoulaensis, S. radiatus, S. sp. cf. pascagoulaensis, and S. williamsi specimens used in genetic analyses along with additional museum specimens from focal drainages. Three measurements were taken for morphological analyses: maximum length (anterior to posterior), height (dorsal to ventral), and width (right to left valve) to the nearest 0.01 mm using digital calipers. One person conducted all measurements, and height and width were measured at the posterior end of the hinge ligament for consistency. Raw measurements are provided in Table 3.
Table 3

Morphological data referenced in Smith et al. (2018) [1] for all Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi.

TaxaCatalog NumberLatitudeLongitudeLength (mm)Height (mm)Width (mm)
Strophitus pascagoulaensisMMNS10064.132.23872912−88.5733600745.9727.0215.31
Strophitus pascagoulaensisMMNS10090.131.96429574−88.5181568839.9823.7913.54
Strophitus pascagoulaensisMMNS10090.231.96429574−88.5181568837.6521.4813.95
Strophitus pascagoulaensisMMNS10090.331.96429574−88.5181568852.3729.3822.01
Strophitus pascagoulaensisMMNS10090.431.96429574−88.5181568851.6328.5919.48
Strophitus pascagoulaensisMMNS6457.131.52414348−89.6546258356.5133.1119.12
Strophitus pascagoulaensisMMNS7545.131.3713172−89.119056239.4222.5513.39
Strophitus pascagoulaensisUF438202.612232.26286−88.5697956.3932.9621.2
Strophitus pascagoulaensisUF438202.612332.26286−88.5697958.130.3721.79
Strophitus pascagoulaensisUF438202.612432.26286−88.5697956.7132.0822.53
Strophitus pascagoulaensisUF438202.612532.26286−88.5697956.8832.6822.39
Strophitus pascagoulaensisUF438202.612632.26286−88.5697945.8228.1217.95
Strophitus pascagoulaensisUF438202.612732.26286−88.5697943.6425.4715.4
Strophitus pascagoulaensisUF438202.612832.26286−88.5697942.4726.6614.58
Strophitus pascagoulaensisUF438202.612932.26286−88.5697942.724.7714.14
Strophitus pascagoulaensisUF438202.613032.26286−88.5697939.7323.9914.12
Strophitus pascagoulaensisUF438202.613132.26286−88.5697938.6624.2113.67
Strophitus pascagoulaensisUF43932232.26286−88.5697938.3623.3114.83
Strophitus pascagoulaensisUF438202.613332.26286−88.5697933.6220.4412.07
Strophitus radiatusASU5224.985631.92777−87.0142645.0724.9114.72
Strophitus radiatusASU5224.985731.92777−87.0142645.727.4514.85
Strophitus radiatusASU5224.985831.92777−87.0142647.9126.7416.06
Strophitus radiatusMMNS10819.134.8572182−89.8054445884.647.5226.76
Strophitus radiatusMMNS10819.234.8572182−89.8054445874.4841.5325.57
Strophitus radiatusMMNS5833.134.43668209−89.3662726474.6538.1224.16
Strophitus radiatusMMNS8933.134.48095713−89.2027439754.2728.4418.32
Strophitus radiatusMMNS9019.134.51633055−89.1834592165.1735.6621.95
Strophitus radiatusUF438160.03234.11203−87.7309339.722.3913.1
Strophitus radiatusUF438165.03932.01874−85.2957948.4926.3116.29
Strophitus radiatusUF438165.04032.01874−85.2957958.6630.4921.38
Strophitus radiatusUF438165.04132.01874−85.2957945.2824.6315.4
Strophitus radiatusUF438167.04233.00305−87.7535661.9733.4222.95
Strophitus radiatusUF438167.04333.00305−87.7535658.7130.9719.92
Strophitus radiatusUF438167.04433.00305−87.7535659.331.7421.63
Strophitus radiatusUF438167.04533.00305−87.7535664.5932.1423.11
Strophitus radiatusUF438167.04633.00305−87.7535662.9834.823.3
Strophitus radiatusUF438167.04733.00305−87.7535648.2227.3514.8
Strophitus radiatusUF438167.04833.00305−87.7535651.1328.118.16
Strophitus radiatusUF438167.04933.00305−87.7535656.6230.6420.34
Strophitus radiatusUF438167.05033.00305−87.7535651.3727.8619.49
Strophitus radiatusUF438197.01032.20303341−84.4153007858.9128.1421.91
Strophitus radiatusUF438200.610832.36612−88.4152253.5631.9718.57
Strophitus radiatusUF438200.610932.36612−88.4152250.9528.9715.82
Strophitus radiatusUF438200.611032.36612−88.4152247.8527.2315.52
Strophitus radiatusUF438200.611132.36612−88.4152245.326.9216.85
Strophitus radiatusUF438200.611232.36612−88.4152246.1426.6515.43
Strophitus radiatusUF438200.611332.36612−88.4152239.1223.2613.44
Strophitus radiatusUF438200.611432.36612−88.4152239.0122.6713.37
Strophitus radiatusUF438200.611532.36612−88.4152236.5520.5611.99
Strophitus radiatusUF438200.611632.36612−88.4152236.9321.4611.85
Strophitus radiatusUF438200.611732.36612−88.4152233.7220.5611.57
Strophitus radiatusUF438200.611832.36612−88.4152233.3619.6411.32
Strophitus radiatusUF438200.611932.36612−88.4152232.8319.4611.02
Strophitus radiatusUF438200.612032.36612−88.4152232.1419.0511.28
Strophitus radiatusUF438206.613934.818−89.0528351.725.9315.62
Strophitus radiatusUF438206.614034.818−89.0528341.1421.6312.82
Strophitus radiatusUF438207.614132.3789−85.181840.623.3114.5
Strophitus radiatusUF438210.614534.75669−89.1473733.6218.5110.1
Strophitus radiatusUF438252.627730.43084−85.1718570.8238.8928.12
Strophitus radiatusUF438795.00533.76028−87.610429.7717.0410.8
Strophitus radiatusUF438880.01132.949566−87.9621548.0929.1616.88
Strophitus radiatusUF438880.01232.949566−87.9621548.3426.0716.24
Strophitus radiatusUF438993.898431.823788−87.38615537.4721.3512.68
Strophitus radiatusUF438994.898632.875918−87.92707951.8229.5320.1
Strophitus radiatusUF441078.00631.069118−85.40562.136.0823.11
Strophitus radiatusUF441078.00731.069118−85.40562.3734.1624.77
Strophitus radiatusUF441078.00831.069118−85.40566.5436.3226.68
Strophitus radiatusUF441131.00931.074716−85.2189835126.7319.47
Strophitus radiatusUF441319.02331.83791−86.9089840.5523.612.44
Strophitus sp. cf. pascagoulaensisMMNS1011332.85110816−89.6494289828.6517.1810.17
Strophitus sp. cf. pascagoulaensisMMNS13006.130.79567−90.4522871.6636.0223.29
Strophitus sp. cf. pascagoulaensisMMNS2329.132.19795718−90.1663285677.7641.3728.15
Strophitus sp. cf. pascagoulaensisMMNS2377.1032.19795718−90.1663285641.0823.4514.22
Strophitus sp. cf. pascagoulaensisMMNS2377.1132.19795718−90.1663285643.4222.6815.38
Strophitus sp. cf. pascagoulaensisMMNS2377.1432.19795718−90.1663285643.4624.3413.96
Strophitus sp. cf. pascagoulaensisMMNS2377.1532.19795718−90.1663285643.8424.9215.78
Strophitus sp. cf. pascagoulaensisMMNS2377.1632.19795718−90.1663285644.6424.5316.6
Strophitus sp. cf. pascagoulaensisMMNS2377.1832.19795718−90.1663285644.1224.7914.98
Strophitus sp. cf. pascagoulaensisMMNS2377.232.19795718−90.1663285631.1617.9910.1
Strophitus sp. cf. pascagoulaensisMMNS2377.2032.19795718−90.1663285645.1726.1215.28
Strophitus sp. cf. pascagoulaensisMMNS2377.2132.19795718−90.1663285646.4627.3918.06
Strophitus sp. cf. pascagoulaensisMMNS2377.2232.19795718−90.1663285647.7628.1215.71
Strophitus sp. cf. pascagoulaensisMMNS2377.2532.19795718−90.1663285649.1927.7617.83
Strophitus sp. cf. pascagoulaensisMMNS2377.2732.19795718−90.1663285648.9828.1216.26
Strophitus sp. cf. pascagoulaensisMMNS2377.2832.19795718−90.1663285681.3943.4629.18
Strophitus sp. cf. pascagoulaensisMMNS2377.432.19795718−90.1663285636.9921.1312.5
Strophitus sp. cf. pascagoulaensisMMNS2377.632.19795718−90.1663285639.0722.7315.5
Strophitus sp. cf. pascagoulaensisMMNS2377.832.19795718−90.1663285641.0923.7715.54
Strophitus sp. cf. pascagoulaensisMMNS2657.131.01063379−90.4612914142.8124.814.85
Strophitus sp. cf. pascagoulaensisMMNS2657.331.01063379−90.4612914160.1433.3223.85
Strophitus sp. cf. pascagoulaensisMMNS2657.431.01063379−90.4612914163.4933.2322.54
Strophitus sp. cf. pascagoulaensisMMNS2657.531.01063379−90.4612914170.6637.327.29
Strophitus sp. cf. pascagoulaensisMMNS4722.132.19795718−90.1663285688.8147.932.49
Strophitus sp. cf. pascagoulaensisMMNS4722.232.19795718−90.1663285652.229.3118.72
Strophitus sp. cf. pascagoulaensisMMNS6267.131.33876638−90.7453650674.3138.3729.44
Strophitus sp. cf. pascagoulaensisMMNS6390.131.28101243−90.7700031770.5838.5223.32
Strophitus sp. cf. pascagoulaensisMMNS6390.431.28101243−90.7700031767.1136.4925.27
Strophitus sp. cf. pascagoulaensisMMNS6411.131.04648752−90.6340968642.8225.7412.84
Strophitus sp. cf. pascagoulaensisMMNS6411.231.04648752−90.6340968647.8727.7217.28
Strophitus sp. cf. pascagoulaensisMMNS6460.132.19795718−90.1663285627.416.648.58
Strophitus sp. cf. pascagoulaensisMMNS6460.232.19795718−90.1663285628.0716.858.87
Strophitus sp. cf. pascagoulaensisMMNS6773.131.28071491−90.7700101874.4640.3329.45
Strophitus sp. cf. pascagoulaensisMMNS6807.131.23495345−90.0639745656.2430.8419.51
Strophitus sp. cf. pascagoulaensisMMNS6807.331.23495345−90.0639745651.6627.6319.25
Strophitus sp. cf. pascagoulaensisMMNS7596.132.19977−90.1664148.0426.115.43
Strophitus sp. cf. pascagoulaensisMNNS2377.732.19795718−90.1663285640.3522.913.62
Strophitus sp. cf. pascagoulaensisUF438205.613631.23189−90.8665560.5133.721.23
Strophitus sp. cf. pascagoulaensisUF438205.613731.23189−90.8665550.5230.2817.16
Strophitus sp. cf. pascagoulaensisUF438205.613831.23189−90.8665550.8729.5820.23
Strophitus sp. cf. pascagoulaensisUF438877.06132.10864−90.2100339.4623.3414.37
Strophitus williamsiUF438158.02431.58155−86.9175549.829.3418
Strophitus williamsiUF438158.02531.58155−86.9175533.419.4911.59
Strophitus williamsiUF438158.02631.58155−86.9175538.1921.4413.55
Strophitus williamsiUF438158.02731.58155−86.917553521.2612.55
Strophitus williamsiUF438158.02831.58155−86.9175539.4123.0915.14
Strophitus williamsiUF438158.02931.58155−86.9175535.8222.9312.42
Strophitus williamsiUF438158.03031.58155−86.9175527.9917.110.6
Strophitus williamsiUF438158.646331.58155−86.9175535.9521.0912.57
Strophitus williamsiUF438158.646431.58155−86.9175538.4422.4314.83
Strophitus williamsiUF438158.646531.58155−86.9175537.8222.8214.05
Strophitus williamsiUF438159.03131.30133−87.0121529.9817.5710.52
Strophitus williamsiUF438161.03331.10979−86.1461146.3628.3818.02
Strophitus williamsiUF438161.03431.10979−86.1461140.9124.3815.31
Strophitus williamsiUF438161.03531.10979−86.1461145.5526.9417.35
Strophitus williamsiUF438161.03631.10979−86.1461146.5727.3117.45
Strophitus williamsiUF438161.03731.10979−86.1461138.5623.6514.54
Strophitus williamsiUF438161.03831.10979−86.1461143.8624.9415.58
Strophitus williamsiUF438713.00431.043−86.101332.1919.0511.65
Strophitus williamsiUF438984.894230.62409−85.9893449.7927.1918.88
Strophitus williamsiUF438984.894330.62409−85.9893442.0724.7815.69
Strophitus williamsiUF438985.894430.62184−86.0659850.1127.0318.46
Strophitus williamsiUF438995.898531.30198−87.0124440.7323.9716.5
Strophitus williamsiUF441102.01330.61419−86.0127553.5627.6720.05
Strophitus williamsiUF441102.01430.61419−86.0127551.1726.6917.94
Strophitus williamsiUF441102.01530.61419−86.0127550.1227.418.45
Strophitus williamsiUF441102.01630.61419−86.0127547.0326.8717.76
Strophitus williamsiUF441102.01730.61419−86.0127546.6225.4117.49
Strophitus williamsiUF43931930.61419−86.0127541.5323.2615.78
Strophitus williamsiUF441102.01930.61419−86.0127544.7625.8816.6
Strophitus williamsiUF441102.02030.61419−86.0127544.0424.916.66
Strophitus williamsiUF441102.02130.61419−86.0127541.7224.0515.43
Strophitus williamsiUF441293.02231.780642−86.22328153.2230.6922.4
Morphological data referenced in Smith et al. (2018) [1] for all Strophitus pascagoulaensis, Strophitus radiatus, Strophitus sp. cf. pascagoulaensis, and Strophitus williamsi.
Subject areaBiology
More specific subject areaPhylogenetics and Systematics
Type of dataGenomic sequences, morphometric measurements, specimen collection details, and diagnostic nucleotides for taxa previously recognized as Anodontoides radiatus
How data was acquiredBidirectional sequencing on an ABI 3730, digital calipers, and phylogenetic methods
Data formatAligned consensus gene sequences, raw measurements, analyzed diagnostic sites
Experimental factorsDNA was extracted from freshwater mussel mantle tissue
Experimental featuresMolecular data was assembled and edited in Geneious v 6.1.2. Diagnostic nucleotides were identified in MEGA6.
Data source locationSamples were collected throughout the United States of America
Data accessibilityMorphological data, diagnostic nucleotides, and nucleotide alignments are presented in this article. Multi-locus sequence data are also available from GenBank: https://www.ncbi.nlm.nih.gov/genbank/
  6 in total

1.  Intraspecific phylogeography of Lasmigona subviridis (Bivalvia: Unionidae): conservation implications of range discontinuity.

Authors:  T L King; M S Eackles; B Gjetvaj; W R Hoeh
Journal:  Mol Ecol       Date:  1999-12       Impact factor: 6.185

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  Molecular and morphological data reveal non-monophyly and speciation in imperiled freshwater mussels (Anodontoides and Strophitus).

Authors:  Chase H Smith; Nathan A Johnson; John M Pfeiffer; Michael M Gangloff
Journal:  Mol Phylogenet Evol       Date:  2017-10-23       Impact factor: 4.286

5.  Molecular systematics of the North American freshwater bivalve genus Quadrula (Unionidae: Ambleminae) based on mitochondrial ND1 sequences.

Authors:  Jeanne M Serb; Jennifer E Buhay; Charles Lydeard
Journal:  Mol Phylogenet Evol       Date:  2003-07       Impact factor: 4.286

6.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

  6 in total

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