Literature DB >> 29874467

Kinetic Solvent Viscosity Effects as Probes for Studying the Mechanisms of Enzyme Action.

Giovanni Gadda, Pablo Sobrado1.   

Abstract

The study of enzyme reaction mechanisms is fundamentally important to our understanding of biochemistry, cellular metabolism, and drug development. This Perspective focuses on the use of kinetic solvent viscosity effects (KSVEs) to study enzyme reactions. This technique is easily implemented and uses steady-state kinetic analyses to probe whether substrate binding is diffusion-controlled and whether product release is the rate-limiting step in the catalytic cycle. In addition, KSVEs can identify isomerization steps that are important for catalysis. The use of KSVEs in combination with other techniques, such as kinetic isotope effects, pH effects, and site-directed mutagenesis, can provide a detailed view of the mechanism of enzyme action. We present the basic theory, important experimental considerations, and potential outcomes and briefly discuss some examples from the literature. The derivation of the equations that are important for data analysis is also presented.

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Year:  2018        PMID: 29874467     DOI: 10.1021/acs.biochem.8b00232

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  Evidence of a preferred kinetic pathway in the carnitine acetyltransferase reaction.

Authors:  Michael J Kratochvil; Nick K Balerud; Samantha J Schindler; Michael A Moxley
Journal:  Arch Biochem Biophys       Date:  2020-07-22       Impact factor: 4.013

2.  Pathogen infection and cholesterol deficiency activate the C. elegans p38 immune pathway through a TIR-1/SARM1 phase transition.

Authors:  Nicholas D Peterson; Janneke D Icso; J Elizabeth Salisbury; Tomás Rodríguez; Paul R Thompson; Read Pukkila-Worley
Journal:  Elife       Date:  2022-01-31       Impact factor: 8.713

3.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

4.  Linear Eyring Plots Conceal a Change in the Rate-Limiting Step in an Enzyme Reaction.

Authors:  Teresa F G Machado; Tracey M Gloster; Rafael G da Silva
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

5.  Hydride Transfer Catalyzed by Glycerol Phosphate Dehydrogenase: Recruitment of an Acidic Amino Acid Side Chain to Rescue a Damaged Enzyme.

Authors:  Rui He; Judith R Cristobal; Naiji Jabin Gong; John P Richard
Journal:  Biochemistry       Date:  2020-12-11       Impact factor: 3.162

6.  Kinetic Characterization and Inhibition of Trypanosoma cruzi Hypoxanthine-Guanine Phosphoribosyltransferases.

Authors:  Kayla Glockzin; Demetrios Kostomiris; Yacoba V T Minnow; Kajitha Suthagar; Keith Clinch; Sinan Gai; Joshua N Buckler; Vern L Schramm; Peter C Tyler; Thomas D Meek; Ardala Katzfuss
Journal:  Biochemistry       Date:  2022-09-15       Impact factor: 3.321

7.  The Interaction of the Flavonoid Fisetin with Human Glutathione Transferase A1-1.

Authors:  Mohammed Hamed Alqarni; Ahmed Ibrahim Foudah; Magdy Mohamed Muharram; Nikolaos E Labrou
Journal:  Metabolites       Date:  2021-03-23

8.  Evidence for a semisolid phase state of aerosols and droplets relevant to the airborne and surface survival of pathogens.

Authors:  Erik Huynh; Anna Olinger; David Woolley; Ravleen Kaur Kohli; Jack M Choczynski; James F Davies; Kaisen Lin; Linsey C Marr; Ryan D Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

9.  A phase transition enhances the catalytic activity of SARM1, an NAD+ glycohydrolase involved in neurodegeneration.

Authors:  Heather S Loring; Victoria L Czech; Janneke D Icso; Lauren O'Connor; Sangram S Parelkar; Alexandra B Byrne; Paul R Thompson
Journal:  Elife       Date:  2021-06-29       Impact factor: 8.140

  9 in total

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