Literature DB >> 29873629

Why are so many effectively published names of prokaryotic taxa never validated?

Aharon Oren1, George M Garrity2, Aidan C Parte3.   

Abstract

Nearly half of the new names of prokaryotic taxa between the ranks of subspecies and class that were effectively published in journals other than the International Journal of Systematic and Evolutionary Microbiology (IJSEM) in the period 2014-2017 were never submitted for validation. A survey of such effectively published names that include information on the etymology of the name, a description of the taxon, and for species and subspecies generally at least one culture collection deposit, shows that for more than 150 such effectively published names per year on average, validation was never requested. To prevent further accumulation in the literature of names of prokaryotic taxa without standing in the nomenclature, we call upon authors of taxon descriptions and on the editors of the journals handling such papers to be more aware of the duty to validate effectively published names.

Keywords:  effective publication; names; valid publication; validation

Mesh:

Year:  2018        PMID: 29873629     DOI: 10.1099/ijsem.0.002851

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

Review 1.  NCBI Taxonomy: a comprehensive update on curation, resources and tools.

Authors:  Conrad L Schoch; Stacy Ciufo; Mikhail Domrachev; Carol L Hotton; Sivakumar Kannan; Rogneda Khovanskaya; Detlef Leipe; Richard Mcveigh; Kathleen O'Neill; Barbara Robbertse; Shobha Sharma; Vladimir Soussov; John P Sullivan; Lu Sun; Seán Turner; Ilene Karsch-Mizrachi
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

2.  Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA.

Authors:  Patrik Inderbitzin; Barbara Robbertse; Conrad L Schoch
Journal:  Phytobiomes J       Date:  2020-03-23

Review 3.  The Changing Face of the Family Enterobacteriaceae (Order: "Enterobacterales"): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease Syndromes.

Authors:  J Michael Janda; Sharon L Abbott
Journal:  Clin Microbiol Rev       Date:  2021-02-24       Impact factor: 26.132

4.  RESCRIPt: Reproducible sequence taxonomy reference database management.

Authors:  Michael S Robeson; Devon R O'Rourke; Benjamin D Kaehler; Michal Ziemski; Matthew R Dillon; Jeffrey T Foster; Nicholas A Bokulich
Journal:  PLoS Comput Biol       Date:  2021-11-08       Impact factor: 4.475

5.  TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes.

Authors:  Jan P Meier-Kolthoff; Joaquim Sardà Carbasse; Rosa L Peinado-Olarte; Markus Göker
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

Review 6.  The status Candidatus for uncultured taxa of Bacteria and Archaea: SWOT analysis.

Authors:  Mark J Pallen
Journal:  Int J Syst Evol Microbiol       Date:  2021-09       Impact factor: 2.747

  6 in total

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