Literature DB >> 29873142

High Basal Levels of γH2AX in Human Induced Pluripotent Stem Cells Are Linked to Replication-Associated DNA Damage and Repair.

Haritha Vallabhaneni1, Patrick J Lynch2, Guibin Chen3, Kyeyoon Park4, Yangtengyu Liu3, Rachel Goehe1, Barbara S Mallon4, Manfred Boehm3, Deborah A Hursh1.   

Abstract

Human induced pluripotent stem cells (iPSCs) have great potential as source cells for therapeutic uses. However, reports indicate that iPSCs carry genetic abnormalities, which may impede their medical use. Little is known about mechanisms contributing to intrinsic DNA damage in iPSCs that could lead to genomic instability. In this report, we investigated the level of DNA damage in human iPSC lines compared with their founder fibroblast line and derived mesenchymal stromal cell (MSC) lines using the phosphorylated histone variant, γH2AX, as a marker of DNA damage. We show that human iPSCs have elevated basal levels of γH2AX, which correlate with markers of DNA replication: 5-ethynyl-2'-deoxyuridine and the single-stranded binding protein, replication protein A. γH2AX foci in iPSCs also colocalize to BRCA1 and RAD51, proteins in the homologous repair pathway, implying γH2AX in iPSCs marks sites of double strand breaks. Our study demonstrates an association between increased basal levels of γH2AX and the rapid replication of iPSCs. Stem Cells 2018;36:1501-1513. Published 2018. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  DNA damage; DNA replication; Induced pluripotent stem cells; Mesenchymal stromal cells; γH2AX

Mesh:

Substances:

Year:  2018        PMID: 29873142      PMCID: PMC6662168          DOI: 10.1002/stem.2861

Source DB:  PubMed          Journal:  Stem Cells        ISSN: 1066-5099            Impact factor:   6.277


  61 in total

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Review 2.  Initiating cellular stress responses.

Authors:  Christopher J Bakkenist; Michael B Kastan
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3.  Assessing the Safety of Human Pluripotent Stem Cells and Their Derivatives for Clinical Applications.

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5.  Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells.

Authors:  Margaret A Young; David E Larson; Chiao-Wang Sun; Daniel R George; Li Ding; Christopher A Miller; Ling Lin; Kevin M Pawlik; Ken Chen; Xian Fan; Heather Schmidt; Joelle Kalicki-Veizer; Lisa L Cook; Gary W Swift; Ryan T Demeter; Michael C Wendl; Mark S Sands; Elaine R Mardis; Richard K Wilson; Tim M Townes; Timothy J Ley
Journal:  Cell Stem Cell       Date:  2012-04-26       Impact factor: 24.633

6.  Distribution of p53 binding protein 1 (53BP1) and phosphorylated H2A.X during mouse preimplantation development in the absence of DNA damage.

Authors:  Céline Ziegler-Birling; Anne Helmrich; Làszlò Tora; Maria-Elena Torres-Padilla
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

7.  Genomic instability in iPS: time for a break.

Authors:  Maria A Blasco; Manuel Serrano; Oscar Fernandez-Capetillo
Journal:  EMBO J       Date:  2011-03-16       Impact factor: 11.598

8.  Quantitative live cell imaging reveals a gradual shift between DNA repair mechanisms and a maximal use of HR in mid S phase.

Authors:  Ketki Karanam; Ran Kafri; Alexander Loewer; Galit Lahav
Journal:  Mol Cell       Date:  2012-07-27       Impact factor: 17.970

9.  Human pluripotent stem cells recurrently acquire and expand dominant negative P53 mutations.

Authors:  Florian T Merkle; Sulagna Ghosh; Nolan Kamitaki; Jana Mitchell; Yishai Avior; Curtis Mello; Seva Kashin; Shila Mekhoubad; Dusko Ilic; Maura Charlton; Genevieve Saphier; Robert E Handsaker; Giulio Genovese; Shiran Bar; Nissim Benvenisty; Steven A McCarroll; Kevin Eggan
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

10.  Cell cycle-dependent inhibition of 53BP1 signaling by BRCA1.

Authors:  Lin Feng; Nan Li; Yujing Li; Jiadong Wang; Min Gao; Wenqi Wang; Junjie Chen
Journal:  Cell Discov       Date:  2015-08-04       Impact factor: 10.849

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  10 in total

1.  Aspirin-Mediated Reset of Preeclamptic Placental Stem Cell Transcriptome - Implication for Stabilized Placental Function.

Authors:  Matthew P Romagano; Lauren S Sherman; Bobak Shadpoor; Markos El-Far; Sami Souayah; Sri Harika Pamarthi; Joshua Kra; Anupama Hood-Nehra; Jean-Pierre Etchegaray; Shauna F Williams; Pranela Rameshwar
Journal:  Stem Cell Rev Rep       Date:  2022-07-31       Impact factor: 6.692

2.  Nanopore Sequencing Indicates That Tandem Amplification of Chromosome 20q11.21 in Human Pluripotent Stem Cells Is Driven by Break-Induced Replication.

Authors:  Jason A Halliwell; Duncan Baker; Kim Judge; Michael A Quail; Karen Oliver; Emma Betteridge; Jason Skelton; Peter W Andrews; Ivana Barbaric
Journal:  Stem Cells Dev       Date:  2021-04-30       Impact factor: 3.272

3.  Human Pluripotent Stem Cells for High-Throughput Drug Screening and Characterization of Small Molecules.

Authors:  Seungmi Ryu; Pei-Hsuan Chu; Claire Malley; John Braisted; Pinar Ormanoglu; Ruili Huang; Misha Itkin; Zina Itkin; Paul Shinn; Carleen Klumpp-Thomas; Sam Michael; Carlos A Tristan; Anton Simeonov; Ilyas Singeç
Journal:  Methods Mol Biol       Date:  2022

Review 4.  The Genomic Health of Human Pluripotent Stem Cells: Genomic Instability and the Consequences on Nuclear Organization.

Authors:  Marianne P Henry; J Ross Hawkins; Jennifer Boyle; Joanna M Bridger
Journal:  Front Genet       Date:  2019-01-21       Impact factor: 4.599

Review 5.  DNA Damage Response and Cell Cycle Regulation in Pluripotent Stem Cells.

Authors:  Andy Chun Hang Chen; Qian Peng; Sze Wan Fong; Kai Chuen Lee; William Shu Biu Yeung; Yin Lau Lee
Journal:  Genes (Basel)       Date:  2021-09-29       Impact factor: 4.096

6.  Single cell heterogeneity in human pluripotent stem cells.

Authors:  Seungbok Yang; Yoonjae Cho; Jiwon Jang
Journal:  BMB Rep       Date:  2021-10       Impact factor: 4.778

Review 7.  The Impact of Acquired Genetic Abnormalities on the Clinical Translation of Human Pluripotent Stem Cells.

Authors:  Alexander Keller; Claudia Spits
Journal:  Cells       Date:  2021-11-19       Impact factor: 6.600

8.  Dynamic Features of Chromosomal Instability during Culture of Induced Pluripotent Stem Cells.

Authors:  Casey O DuBose; John R Daum; Christopher L Sansam; Gary J Gorbsky
Journal:  Genes (Basel)       Date:  2022-06-27       Impact factor: 4.141

9.  Nucleosides Rescue Replication-Mediated Genome Instability of Human Pluripotent Stem Cells.

Authors:  Jason A Halliwell; Thomas J R Frith; Owen Laing; Christopher J Price; Oliver J Bower; Dylan Stavish; Paul J Gokhale; Zoe Hewitt; Sherif F El-Khamisy; Ivana Barbaric; Peter W Andrews
Journal:  Stem Cell Reports       Date:  2020-05-14       Impact factor: 7.765

Review 10.  A Survey of Essential Genome Stability Genes Reveals That Replication Stress Mitigation Is Critical for Peri-Implantation Embryogenesis.

Authors:  Georgia R Kafer; Anthony J Cesare
Journal:  Front Cell Dev Biol       Date:  2020-05-29
  10 in total

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