| Literature DB >> 29867846 |
Xingyang Cui1, Yunjia Shi1, Lili Zhao2, Shanshan Gu1, Chengwei Wei1, Yan Yang1, Shanshan Wen1, Hongyan Chen2, Junwei Ge1,3.
Abstract
The mink circovirus (MiCV), a newly discovered pathogen, is associated with diarrhea in farmed minks. The prevalence and economic importance of this virus remain poorly understood, and a quantitative method for diagnosis of MiCV infection has not been established. This research aims to develop a highly specific, sensitive, and quantitative assay for MiCV. A Real-Time quantitative polymerase chain reaction (qPCR) assay was developed to detect different isolates of the MiCV in mink samples. The qPCR system is highly sensitive with a detection limit of as low as 10 viral DNA copies. The specificity of this qPCR assay was supported by the absence of cross-reaction with other pathogens. The coefficients of variation were low for both inter-assay and intra-assay variabilities. In addition, the results also expressed the distribution of MiCV in infectious mink tissues with high levels of virus in the skeletal muscle and heart. The heart occupied a higher proportion than other tissues, which can be considered the primary source of test material. This qPCR method could be a useful tool for epidemiological studies and disease management. This method for MiCV is highly specific, sensitive, repeatable, quantitative, and can rapidly determine viral load levels in different tissues samples.Entities:
Keywords: Real-Time quantitative PCR; mink circovirus; repeatability; sensitivity; specificity
Year: 2018 PMID: 29867846 PMCID: PMC5960700 DOI: 10.3389/fmicb.2018.00937
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Amplification curve and standard curve of MiCV. (A): Standard curve (Slope: −3.155, Y-Intercept: 39.202, and Efficiency: 107.447) was analyzed with the ABI7500 software. (B): Specificity of the qPCR. Ten other viral pathogens were used for the specificity test. 1: MiCV HEB15 strain DNA; 2–11: DNA and RNA samples of AMDV, MEV, CDV, PRV, MCV, CAV2, RV, PCV1, PCV2, DogCV, and H2O. (C): Amplification curves. Ten-fold dilutions of standard DNA ranging from 108 copies/μL to 101 copies/μL were used as standard controls.
Intra- and inter-assay reproducibility of qPCR.
| 107 | 16.07 ± 0.25 | 1.58 | 16.53 ± 0.21 | 1.29 |
| 105 | 22.48 ± 0.38 | 1.69 | 22.92 ± 0.50 | 2.18 |
| 103 | 28.98 ± 0.21 | 0.73 | 29.28 ± 0.28 | 0.97 |
| 102 | 31.33 ± 0.25 | 0.79 | 31.82 ± 0.63 | 1.98 |
Detection of MiCV in minks from different provinces.
| Heilongjiang | 1 | 5/21 | 23.81 | 7/21 | 33.33 |
| 2 | 0/16 | 0.00 | 3/16 | 18.75 | |
| 3 | 6/18 | 33.33 | 8/18 | 44.44 | |
| 4 | 3/16 | 18.75 | 4/16 | 25.00 | |
| 5 | 4/28 | 14.29 | 8/28 | 28.57 | |
| Shandong | 1 | 8/19 | 42.11 | 10/19 | 52.63 |
| 2 | 6/16 | 37.50 | 10/16 | 62.50 | |
| 3 | 5/18 | 27.78 | 8/18 | 44.44 | |
| 4 | 4/20 | 20.00 | 9/20 | 45.00 | |
| 5 | 9/31 | 29.03 | 18/31 | 58.06 | |
| Hebei | 1 | 10/24 | 41.67 | 17/24 | 70.83 |
| 2 | 5/17 | 29.41 | 11/17 | 64.71 | |
| 3 | 4/12 | 33.33 | 8/12 | 66.67 | |
| 4 | 5/13 | 38.46 | 9/13 | 69.23 | |
| 5 | 6/15 | 40.00 | 10/15 | 66.67 | |
| Liaoning | 1 | 6/23 | 26.09 | 11/23 | 47.83 |
| 2 | 5/16 | 31.25 | 10/16 | 62.50 | |
| 3 | 3/15 | 20.00 | 9/15 | 60.00 | |
| 4 | 4/11 | 36.36 | 8/11 | 72.73 | |
| Jilin | 1 | 6/13 | 46.15 | 7/13 | 53.85 |
| 2 | 4/14 | 28.57 | 5/14 | 35.71 | |
| 3 | 3/13 | 23.08 | 4/13 | 30.77 | |
| 4 | 2/12 | 16.67 | 4/12 | 33.33 | |
| Total | 113/401 | 28.18 | 198/401 | 49.38 | |
Quantities of MiCV DNA in the tissues of artificially-infected minks by qPCR.
| liver | 2.92 × 107 | 5.82 × 105 | 1.60 × 107 | 3.79 × 105 | 3.87 × 107 | 1.06 × 107 | 1.06 × 106 | 2.47 × 106 |
| lung | 5.52 × 106 | 2.65 × 107 | 2.46 × 107 | 1.06 × 107 | 1.05 × 107 | 6.63 × 106 | 2.35 × 107 | 3.80 × 107 |
| spleen | 2.35 × 107 | 4.73 × 106 | 2.79 × 107 | 1.04 × 106 | 1.21 × 107 | 3.14 × 107 | 4.52 × 105 | 1.05 × 106 |
| heart | 1.23 × 108 | 3.08 × 108 | 4.81 × 107 | 3.6 × 108 | 6.93 × 107 | 1.26 × 109 | 6.27 × 107 | 3.32 × 109 |
| duodenum | 1.40 × 107 | 2.43 × 106 | 2.32 × 107 | 4.91 × 107 | 7.27 × 106 | 8.22 × 108 | 1.64 × 108 | 2.37 × 106 |
| jejunum | 3.36 × 107 | 7.60 × 105 | 3.36 × 107 | 2.06 × 106 | 1.60 × 107 | 9.16 × 106 | 9.23 × 107 | 7.77 × 106 |
| ileum | 4.61 × 106 | 7.59 × 106 | 2.02 × 107 | 1.33 × 107 | 1.14 × 107 | 4.36 × 106 | 8.65 × 106 | 2.59 × 105 |
| colon | 1.45 × 107 | 1.16 × 106 | 1.89 × 107 | 1.66 × 106 | 3.95 × 106 | 6.44 × 107 | 3.98 × 105 | 3.05 × 105 |
| brain | 1.63 × 107 | 1.78 × 107 | 1.86 × 107 | 5.11 × 108 | 2.32 × 108 | 1.74 × 109 | 3.51 × 107 | 2.97 × 107 |
| kidney | 5.08 × 107 | 1.22 × 107 | 1.96 × 106 | 2.53 × 108 | 4.61 × 106 | 4.59 × 107 | 1.86 × 106 | 1.23 × 108 |
| skeletal muscle | 1.49 × 107 | 9.63 × 107 | 1.04 × 108 | 2.14 × 109 | 5.08 × 107 | 1.48 × 108 | 1.48 × 108 | 1.10 × 109 |
| marrow | 1.29 × 107 | 2.41 × 105 | 1.83 × 106 | 3.11 × 106 | 1.98 × 107 | 1.58 × 107 | 1.66 × 107 | 3.95 × 106 |
| mesenteric lymph nodes | 2.38 × 107 | 3.56 × 106 | 6.25 × 107 | 7.64 × 106 | 6.18 × 106 | 3.83 × 106 | 8.12 × 106 | 7.24 × 106 |
Comparison of the results obtained from 35 selected samples using conventional PCR and qPCR.
| 1 | 1.64 × 108 | + |
| 2 | 8.23 × 105 | − |
| 3 | 3.09 × 108 | + |
| 4 | 1.26 × 105 | − |
| 5 | 3.50 × 106 | + |
| 6 | 3.05 × 106 | + |
| 7 | 4.88 × 105 | − |
| 8 | 1.10 × 106 | + |
| 9 | 6.18 × 105 | − |
| 10 | 3.31 × 109 | + |
| 11 | 3.36 × 107 | + |
| 12 | 3.75 × 108 | + |
| 13 | 2.33 × 108 | + |
| 14 | 1.29 × 109 | + |
| 15 | 1.60 × 107 | + |
| 16 | 1.14 × 107 | + |
| 17 | 1.75 × 105 | − |
| 18 | 2.14 × 109 | + |
| 19 | 2.98 × 107 | + |
| 20 | 5.76 × 105 | − |
| 21 | 1.59 × 108 | + |
| 22 | 5.11 × 105 | − |
| 23 | 1.48 × 108 | + |
| 24 | 7.28 × 106 | + |
| 25 | 2.53 × 108 | + |
| 26 | 4.51 × 105 | − |
| 27 | 2.59 × 105 | − |
| 28 | 3.60 × 108 | + |
| 29 | 6.53 × 107 | + |
| 30 | 5.33 × 107 | + |
| 31 | 4.96 × 108 | + |
| 32 | 6.28 × 107 | + |
| 1 | 0 | − |
| 2 | 0 | − |
| 3 | 0 | − |
(+) detected as positive by conventional PCR.
(−) detected as negative by conventional PCR.
Means of triplicate copy number.