| Literature DB >> 29867530 |
Tianshu Xu1, Zhijun Kong2, Hui Zhao3.
Abstract
Tumor necrosis factor (TNF)-α, a major part in inflammatory, infectious and tumor processes, and is pivotal at the early stages of gastric cancer. Relationship between its risk and TNF-α rs361525 polymorphism has been demonstrated, but remains conflicting and controversial. Therefore, a meta-analysis was conducted to more precisely estimate this relationship. PubMed, Web of Science, EMBASE and CNKI were comprehensively searched to find out relevant articles through October 5, 2017. The strength of the relationship was assessed using pooled odds ratios and 95% confidence intervals. Totally 20 articles were included involving 4,084 cases and 7,010 controls. No significant relationship between TNF-α rs361525 polymorphism and increased GC risk was found in the whole populations. Subgroup analyses uncovered TNF-α rs361525 polymorphism intensified the risk of GC among Asians under five models, but decreased the risk of GC among Caucasiansin the allelic and dominant models. Subgroup analysis by genotyping methods revealed increased risk for other methods. In conclusion, this meta-analysis suggests TNF-α rs361525 polymorphism is related to the risk of GC, especially for Asians.Entities:
Keywords: false-positive report probability; gastric cancer; gene polymorphism; meta-analysis; tumor necrosis factor α
Year: 2018 PMID: 29867530 PMCID: PMC5962813 DOI: 10.3389/fphys.2018.00469
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Figure 1Selection for eligible papers included in this meta-analysis.
Characteristics of included studies.
| Jang et al., | N/A | N/A | N/A | N/A | HB | Korea | Asian | 52/92 | PCR-RFLP | 0.391 | 6 |
| Wu et al., | N/A | N/A | N/A | N/A | HB | Taiwan | Asian | 150/220 | Sequencing | <0.001 | 5 |
| Wu et al., | 84/136 | 88/142 | 60.9 ± 12.6 | 60.7 ± 13.4 | HB | Taiwan | Asian | 220/230 | Sequencing | <0.001 | 6 |
| Glas et al., | 71/74 | 41/47 | 65 ± 12.5 | 45 ± 12.5 | HB | Germany | Caucasian | 145/88 | PCR-RFLP | 0.635 | 6 |
| Lee et al., | 142/199 | 123/138 | 46.0 ± 12.6 | 48.7 ± 10.9 | HB | Korea | Asian | 341/261 | Sequencing | 0.416 | 6 |
| Wu et al., | 78/126 | 84/126 | 60.1 ± 12.1 | 58.7 ± 14.4 | HB | Taiwan | Asian | 204/210 | Sequencing | <0.001 | 6 |
| Lu et al., | 67/183 | 83/217 | 59.0 ± 12.3 | 59.1 ± 9.4 | PB | China | Asian | 250/300 | DHPLC | 0.49 | 7 |
| Zambon et al., | N/A | N/A | N/A | N/A | HB | Italy | Caucasian | 129/644 | TaqMan | 0.378 | 6 |
| Kamangar et al., | N/A | N/A | N/A | N/A | PB | Finland | Caucasian | 210/115 | TaqMan | <0.001 | 7 |
| Zambon et al., | 60/70 | 72/70 | 58.6 ± 13.3 | 53.5 ± 11.2 | HB | China | Asian | 130/142 | gene chip | 0.23 | 6 |
| Hou et al., | 103/202 | 152/275 | <50 39 | <50 52 | PB | Poland | Caucasian | 299/412 | TaqMan | 0.492 | 6 |
| Garcia-Gonzalez et al., | 146/258 | 138/266 | 73.7 ± 10.3 | 71.3 ± 12.0 | HB | Spain | Caucasian | 404/404 | TaqMan | 0.011 | 6 |
| Zeng et al., | 60/70 | 72/70 | 59.0 ± 13.0 | 54.0 ± 11.0 | HB | China | Asian | 130/142 | gene chip | 0.23 | 7 |
| Crusius2008 | N/A | N/A | N/A | N/A | PB | Europe | Caucasian | 235/1123 | TaqMan | 0.367 | 8 |
| Yang et al., | 25/59 | 100/236 | ≤ 63 43 | ≤63 176 | PB | Korea | Asian | 83/331 | SNaPshot | 0.457 | 6 |
| Bai et al., | 50/64 | 56/63 | 58.3 ± 12.5 | 55.9 ± 14.9 | HB | China | Asian | 114/119 | gene chip | 0.668 | 6 |
| Whiteman et al., | 22/247 | 459/896 | <49 21 | <49 216 | PB | Australia | Caucasian | 289/1299 | gene chip | 0.007 | 7 |
| Yin et al., | N/A | N/A | N/A | N/A | HB | China | Asian | 310/485 | SNaPshot | 0.369 | 6 |
| Essadik et al., | N/A | N/A | N/A | N/A | PB | Morocco | Caucasian | 93/74 | Sequencing | 0.978 | 7 |
| Xu et al., | 169/127 | 180/139 | 44.0 ± 16.6 | 44.3 ± 15.9 | HB | China | Asian | 294/319 | PCR-RFLP | 0.466 | 6 |
SOC, source of controls; PB, population-based controls; HB, hospital-based controls; NOS, Newcastle-Ottawa Scale; HWE, Hardy–Weinberg equilibrium; PCR-RFLR, PCR-restriction fragment length polymorphism; DHPLC, Denaturing high-performance liquid chromatograph.
Meta-analysis of association between TNF-α rs361525 polymorphism and gastric cancer.
| A vs. G | 1.06(0.83,1.35) | 0.646 | 1.000 | <0.001 | 66.2 | Random |
| AA+GA vs. GG | 1.06(0.83,1.36) | 0.657 | 1.000 | <0.001 | 63.1 | Random |
| AA vs. GA+GG | 1.14(0.70,1.85) | 0.782 | 0.782 | 0.053 | 42.4 | Fixed |
| AA vs. GG | 1.12(0.69,1.83) | 0.644 | 1.000 | 0.047 | 43.5 | Fixed |
| GA vs. GG | 1.05(0.81,1.34) | 0.733 | 0.917 | <0.001 | 60.2 | Random |
P values were calculated by a multiple comparison of Bonferroni correction.
Summary of the subgroup analyses in this meta-analysis.
| A vs. G | Ethnicity | Asian | 12 | 0.002 | 0.054 | 32.8 | |
| Caucasian | 8 | 0.043 | 0.106 | 56.4 | |||
| SOC | HB | 13 | 1.26(0.97, 1.64) | 0.084 | 0.117 | 55.3 | |
| PB | 7 | 0.77(0.49, 1.22) | 0.271 | 0.265 | 77.2 | ||
| HWE | Positive | 14 | 1.19(0.90, 1.59) | 0.226 | 0.183 | 65.7 | |
| Negative | 6 | 0.76(0.57, 1.00) | 0.051 | 0.019 | 14.8 | ||
| Genotyping | PCR-RFLR | 3 | 0.80(0.35, 1.80) | 0.582 | 0.299 | 58.6 | |
| Sequencing | 5 | 0.80(0.45, 1.43) | 0.455 | 0.223 | 53.7 | ||
| TagMan | 5 | 0.86(0.62, 1.19) | 0.355 | 0.063 | 47.8 | ||
| Other methods | 7 | 0.033 | 0.200 | 71.1 | |||
| NOS score | 5 ≤ Score ≤ 6 | 14 | 1.22(0.97, 1.53) | 0.054 | 0.047 | 42.5 | |
| Score > 6 | 6 | 0.75(0.41, 1.37) | 0.185 | <0.001 | 83.2 | ||
| GA+AA vs. GG | Ethnicity | Asian | 12 | 0.007 | 0.086 | 40.4 | |
| Caucasian | 8 | 0.043 | 0.082 | 47.3 | |||
| SOC | HB | 13 | 1.25(0.95, 1.65) | 0.111 | 0.122 | 52.6 | |
| PB | 7 | 0.79(0.50, 1.24) | 0.301 | 0.253 | 69.6 | ||
| HWE | Positive | 14 | 1.16(0.85, 1.57) | 0.357 | 0.216 | 67.0 | |
| Negative | 6 | 0.80(0.62, 1.04) | 0.095 | <0.001 | 0.0 | ||
| Genotyping | PCR-RFLR | 3 | 0.81(0.36, 1.83) | 0.606 | 0.291 | 56.8 | |
| Sequencing | 5 | 0.80(0.42, 1.50) | 0.479 | 0.262 | 51.8 | ||
| TagMan | 5 | 0.87(0.66, 1.15) | 0.333 | 0.025 | 24.1 | ||
| Other methods | 7 | 1.53(0.99, 2.36) | 0.054 | 0.243 | 72.6 | ||
| NOS score | 5 ≤ Score ≤ 6 | 14 | 1.20(0.95, 1.50) | 0.120 | 0.105 | 33.8 | |
| Score >6 | 6 | 0.77(0.41, 1.45) | 0.414 | <0.001 | 82.8 | ||
| AA vs. GA+GG | Ethnicity | Asian | 7 | 0.018 | 0.300 | 17.1 | |
| Caucasian | 6 | 0.51(0.23, 1.12) | 0.095 | 0.040 | 57.2 | ||
| SOC | HB | 8 | 1.50(0.84, 2.67) | 0.172 | 0.021 | 57.5 | |
| PB | 5 | 0.53(0.19, 1.48) | 0.226 | 0.673 | 0.0 | ||
| HWE | Positive | 7 | 0.001 | 0.172 | 33.6 | ||
| Negative | 6 | 0.031 | 0.457 | 0.0 | |||
| Genotyping | PCR-RFLR | 1 | 0.58(0.02, 14.52) | 0.741 | N/A | N/A | |
| Sequencing | 4 | 0.86(0.33, 2.25) | 0.761 | 0.835 | 0.0 | ||
| TagMan | 4 | 0.61(0.26, 1.42) | 0.247 | 0.012 | 72.5 | ||
| Other methods | 4 | 0.009 | 0.127 | 47.4 | |||
| NOS score | 5 ≤ Score ≤ 6 | 8 | 1.50(0.84, 2.67) | 0.172 | 0.021 | 57.5 | |
| Score>6 | 5 | 0.53(0.19, 1.48) | 0.226 | 0.673 | 0.0 | ||
| AA vs. GG | Ethnicity | Asian | 7 | 0.018 | 0.291 | 18.3 | |
| Caucasian | 6 | 0.50(0.23, 1.10) | 0.084 | 0.039 | 57.4 | ||
| SOC | HB | 8 | 1.50(0.84, 2.67) | 0.171 | 0.021 | 57.6 | |
| PB | 5 | 0.51(0.18, 1.43) | 0.199 | 0.641 | 0.0 | ||
| HWE | Positive | 7 | 0.002 | 0.146 | 37.0 | ||
| Negative | 6 | 0.029 | 0.446 | 0.0 | |||
| Genotyping | PCR-RFLR | 1 | 0.53(0.02, 13.30) | 0.700 | N/A | N/A | |
| Sequencing | 4 | 0.85(0.33, 2.21) | 0.740 | 0.794 | 0.0 | ||
| TagMan | 4 | 0.60(0.26, 1.40) | 0.236 | 0.013 | 72.4 | ||
| Other methods | 4 | 0.009 | 0.121 | 48.4 | |||
| NOS score | 5 ≤ Score ≤ 6 | 8 | 1.50(0.84, 2.67) | 0.171 | 0.021 | 57.6 | |
| Score>6 | 5 | 0.51(0.18, 1.43) | 0.199 | 0.641 | 0.0 | ||
| GA vs. GG | Ethnicity | Asian | 12 | 0.032 | 0.032 | 48.0 | |
| Caucasian | 8 | 0.76(0.57, 1.01) | 0.057 | 0.115 | 39.6 | ||
| SOC | HB | 13 | 1.21(0.90, 1.63) | 0.210 | 0.011 | 53.7 | |
| PB | 7 | 0.82(0.53, 1.26) | 0.358 | 0.009 | 64.9 | ||
| HWE | Positive | 14 | 1.09(0.80, 1.50) | 0.585 | <0.001 | 67.6 | |
| Negative | 6 | 0.87(0.66, 1.15) | 0.322 | 0.466 | 0.0 | ||
| Genotyping | PCR-RFLR | 3 | 0.84(0.38, 1.82) | 0.651 | 0.651 | 52.6 | |
| Sequencing | 5 | 0.80(0.39, 1.66) | 0.553 | 0.553 | 49.0 | ||
| TagMan | 5 | 0.90(0.69, 1.16) | 0.411 | 0.411 | 7.6 | ||
| Other methods | 7 | 1.43(0.91, 2.26) | 0.120 | 0.120 | 73.9 | ||
| NOS score | 5 ≤ Score ≤ 6 | 14 | 1.16(0.91, 1.47) | 0.233 | 0.096 | 34.9 | |
| Score>6 | 6 | 0.80(0.43, 1.48) | 0.473 | <0.001 | 80.8 |
SOC, source of controls; PB, population-based controls; HB, hospital-based controls; NOS, Newcastle-Ottawa Scale; HWE, Hardy–Weinberg equilibrium; PCR-RFLR, PCR-restriction fragment length polymorphism. Bold values are statistically significant (P < 0.05).
Figure 2Forest plot shows odds ratio for the association between TNF-α rs361525 polymorphism and GC risk (A vs. G).
Figure 3Stratification analyses of ethnicity between TNF-α rs361525 polymorphism and GC risk (AA+GA vs. GG).
Figure 4Stratification analyses of genotyping methods between TNF-α rs361525 polymorphism and GC risk (A vs. G).
Figure 5The TNF-α mRNA expression levels by the genotypes of rs361525 polymorphism.
Figure 6Begg's tests for publication bias between TNF-α rs361525 polymorphism and risk of GC (GA vs. GG).
False-positive report probability values for associations between the TNF-α−238 polymorphism and gastric cancer risk.
| Asian | 1.46(1.16, 1.85) | 0.002 | 0.605 | 0.247 | 0.768 | 0.971 | ||
| Caucasian | 0.72(0.53, 0.99) | 0.043 | 0.670 | 0.366 | 0.864 | 0.985 | 0.998 | |
| Other methods | 1.54(1.04, 2.30) | 0.033 | 0.565 | 0.344 | 0.852 | 0.983 | 0.998 | |
| Asian | 1.46(1.11, 1.91) | 0.007 | 0.603 | 0.535 | 0.921 | 0.991 | ||
| Caucasian | 0.73(0.54, 0.99) | 0.043 | 0.710 | 0.353 | 0.857 | 0.984 | 0.998 | |
| Asian | 2.41(1.16, 4.98) | 0.018 | 0.543 | 0.230 | 0.766 | 0.971 | 0.997 | |
| HWE-positive | 3.82(1.69, 8.61) | 0.001 | 0.497 | 0.166 | 0.668 | 0.953 | ||
| HWE-negative | 0.45(0.21, 0.93) | 0.031 | 0.624 | 0.309 | 0.831 | 0.980 | 0.998 | |
| Other methods | 3.43(1.37, 8.61) | 0.009 | 0.522 | 0.134 | 0.630 | 0.945 | 0.994 | |
| Asian | 2.41(1.17, 4.98) | 0.018 | 0.543 | 0.230 | 0.766 | 0.971 | 0.997 | |
| HWE-positive | 3.68(1.64, 8.28) | 0.002 | 0.529 | 0.272 | 0.791 | 0.974 | ||
| HWE-negative | 0.44(0.21, 0.92) | 0.029 | 0.628 | 0.293 | 0.820 | 0.979 | 0.998 | |
| Other methods | 3.40(1.36, 8.47) | 0.009 | 0.531 | 0.627 | 0.944 | 0.994 | ||
| Asian | 1.40(1.03, 1.91) | 0.032 | 0.661 | 0.304 | 0.827 | 0.980 | 0.988 | |
HWE, Hardy–Weinberg equilibrium.