| Literature DB >> 29865062 |
Elżbieta Kuźma1, Eilis Hannon1, Ang Zhou2, Ilianna Lourida1, Alison Bethel3, Deborah A Levine4, Katie Lunnon1, Jo Thompson-Coon3, Elina Hyppönen2, David J Llewellyn1.
Abstract
BACKGROUND: Numerous risk factors for dementia are well established, though the causal nature of these associations remains unclear.Entities:
Keywords: Alzheimer’s disease; Mendelian randomization; cognition; dementia; instrumental variable; risk factor
Mesh:
Year: 2018 PMID: 29865062 PMCID: PMC6004893 DOI: 10.3233/JAD-180013
Source DB: PubMed Journal: J Alzheimers Dis ISSN: 1387-2877 Impact factor: 4.472
Fig. 1Schematic of the principles of Mendelian randomization. Mendelian randomization can be used to test for a causal relationship between a risk factor and outcome, indicated here with the red arrow. A genetic instrument (e.g., a single nucleotide polymorphism) associated with the risk factor (blue arrow) can be used as an instrumental variable to effectively randomly assign individuals to exposure groups. Reverse causation can be excluded as it is not possible for the outcome to influence a genotype which is established at conception. One important assumption is that there is no association between the genetic instrument and the outcome except via the risk factor (i.e., the dashed arrow does not exist).
Results of included studies investigating education and lifestyle factors
| Study | Methods | Results |
|---|---|---|
| Exposure (analytic n/casesa) | MR estimate (95% CI) | |
| Nguyen et al., 2016 [ | GRS is weighted sum of risk alleles (R2 = 0.11%); separate-sample 2SLSb | |
| Østergaard et al., 2015 [ | Inverse-variance weighted combination of summary statisticsc | |
| North et al., 2015 [ | 2SLS regression within each cohort and combined with a random effects meta-analysis | |
| Almeida et al., 2014 [ | Association test of IV on outcome | |
| Au Yeung et al., 2012 [ | 2SLS regression; R2 = 3% | |
| Kwok et al., 2016 [ | Weighted generalized linear regression for correlated SNPse |
AD, Alzheimer’s disease; CI, Confidence Interval; GRS, genetic risk score; IV, instrumental variable; MR, Mendelian randomization; OR, odds ratio; R2, percentage of variance explained; 2SLS, two-stage least squares. aReported for binary outcomes only. bAdjusted for sex, age at first outcome assessment, age2, early life socioeconomic status, population eigenvectors. cStudy applied a Bonferroni corrected significance threshold of p < 3.8×10−3. dTotal number of participants with age, sex, genotype, smoking status and general fluid intelligence factor, and restricted to those included also in the observational analysis. eBonferroni corrected significance level of 0.002. fIV estimated OR per cup per day = 1.29 (0.82, 2.03) after exclusion of 4 SNPs associated with body weight or lipids and 2 SNPs previously not associated with coffee.
Results of included studies investigating cardiovascular factors and related biomarkers
| Study | Methods | Results |
|---|---|---|
| Mukherjee et al., 2015 [ | GRS is weighted sum of alleles (R2 ∼1%); association test of GRS on outcome for ADGC and HRS; inverse variance weighted summary statistic for GERAD; ADGC and GERAD results combined with fixed effects meta-analysisb | |
| Østergaard et al., 2015 [ | Inverse-variance weighted combination of summary statisticsc | |
| Proitsi et al., 2014 [ | GRS is standardized weighted sum of risk alleles (total cholesterol full GRS R2 = 3.59%, specific GRS R2 = 0.31%; HDL full GRS R2 = 4.19%, specific GRS R2 = 0.02%; LDL full GRS R2 = 1.83%, specific GRS R2 = 0.28%; triglycerides full GRS R2 = 4.34%, specific GRS R2 = 0.50%); where GRS risk prediction R2≥1.5% ratio of coefficients methodg; where GRS risk prediction R2 < 1.5% inverse-variance weighted combination of summary statistics. Results from each cohort were combined with inverse-variance fixed effects meta-analysis | |
| Cruchaga et al., 2012 [ | 2SLS regressionh; R2 = 8.2% | |
| Marioni et al., 2011 [ | Association of IV on outcome in each cohort were combined with inverse variance meta-analysisi | |
| Quinn et al., 2015 [ | Association test of IV on outcomej; (D-dimer R2 = 1.8%; fibrinogen R2 = 2%; plasminogen activator inhibitor R2 = 3.7%; von Willebrand factor; R2 = 13%) | |
| Hu et al., 2016 [ | Ratio of coefficients method |
AD, Alzheimer’s disease; ADGC, Alzheimer’s Disease Genetics Consortium; APOE, apolipoprotein E; BMI, body mass index; CI, confidence interval; CSF, cerebrospinal fluid; GERAD, Genetic and Environmental Risk for Alzheimer’s Disease consortium; GRS, genetic risk score; HDL, high-density lipoprotein cholesterol; IV, instrumental variable; LDL, low-density lipoprotein cholesterol; MR, Mendelian randomization; OR, odds ratio; SBP, systolic blood pressure; SD, standard deviation; 2SLS, two-stage least squares. aReported for binary outcomes only. bADGC models adjusted for study, 3 genetic principal components; HRS models adjusted for 6 genetic principal components, age and sex. cStudy applied a Bonferroni corrected significance threshold of p < 3.8×10−3. dIV estimated OR per total cholesterol SD = 1.04; 95% CI: 0.95–1.13, p = 0.84 after exclusion of SNPs associated with AD. eIV estimated OR per HDL SD = 1.01, 95% CI: 0.93–1.09, p = 0.87 after exclusion of SNPs associated with AD. fIV estimated OR per LDL SD = 1.07, 95% CI: 0.98–1.17, p = 0.14 after exclusion of SNPs associated with AD. gAll analyses of GRS on AD adjusted for the first 4 genetic principal components, additional adjustment for genotyping batch in Institute of Psychiatry Plus data only. hAdjustment strategy unclear. iAdjusted for age and sex. jAdjusted for age, sex, Mill Hill test, household income, education, blood pressure, heart rate, body mass index, waist-hip ratio, alcohol consumption, smoking, vascular and cognitive comorbidity history. kEstimates (except for fibrinogen) provided from the authors at request.
Results of included studies investigating diabetes related and other endocrine factors, and telomere length
| Study Exposure (analytic n/casesa) | Methods | Results MR estimate (95% CI) |
|---|---|---|
| Østergaard et al., 2015 [ | Inverse-variance weighted combination of summary statisticsb | |
| Walter et al., 2016 [ | GRS is weighted sum of risk alleles converted to a probability predicting dementia probability (logit) T2D GRS R2 = 1.98% adiposity GRS R2 = 0.09% β-cell function GRS R2 = 1.28% insulin sensitivity GRS R2 = 0.29% other GRS R2 = 0.30%; 2SLS regression for dementia probabilityd; inverse-variance weighted combination of summary statistics for AD | |
| Kueider et al., 2016 [ | GRS is sum of minor alleles; 2SLS regressionf | |
| Mokry et al., 2016 [ | Inverse-variance weighted combination of summary statistics; R2 = 2.44% | |
| Zhao et al., 2016 [ | 2SLS regression; R2 = 4.1% | |
| Au Yeung et al., 2016 [ | Ratio of coefficients; R2 = 4.9%; | |
| Zhan et al., 2016 [ | Inverse-variance weighted combined summary statistics |
AD, Alzheimer’s disease; CI, confidence interval; GRS, genetic risk score; MR, Mendelian randomization; OR, odds ratio; SD, standard deviation; SNP, single nucleotide polymorphism; T2D, type 2 diabetes; 2SLS, two-stage least squares; 25(OH)D, 25-hydroxyvitamin D. aReported for binary outcomes only. bStudy applied a Bonferroni corrected significance threshold of p < 3.8×10−3. cIV estimated OR per fasting glucose SD = 1.19; 95% CI: 1.03–1.37, p = 0.02 after exclusion of 1 SNP associated with AD. dAdjusted for age, sex and 6 population eigenvectors in analyses of dementia probability. eBonferroni corrected p = 0.08. fAdjusted for age, sex, education, apolipoprotein E ɛ4 status, depressive symptoms, body mass index, and season of 25(OH)D collection. gIV estimated OR per SD decrease in natural log 25(OH)D = 1.19 (0.96, 1.45), p = 0.11 and 1.26 (1.00, 1.60), p = 0.05 after exclusion of rs2282679 due to potential pleiotropic effects and rs12785878 as an ancestry marker, respectively.
Fig. 2Power curves for genetic instruments with R2 of 0.1%, 0.2%, 0.4%, 0.8%, 1.6%, and 5.0% when outcomes are binary (A) and continuous (B). The power functions were taken from Burgess [46]. For binary outcomes, two-sided type 1 error, effect size (in odds ratio for 1 standard deviation (SD) increase in the exposure), and case to control ratio were set to be 0.05, 1.5, and 1 : 3, respectively. For continuous outcomes, two-sided type 1 error and effect size (in SD for 1 SD increase in the exposure) were set to be 0.05 and 0.15, respectively.