Literature DB >> 29863659

Gene-targeted Random Mutagenesis to Select Heterochromatin-destabilizing Proteasome Mutants in Fission Yeast.

Hogyu David Seo1, Daeyoup Lee2.   

Abstract

Random mutagenesis of a target gene is commonly used to identify mutations that yield the desired phenotype. Of the methods that may be used to achieve random mutagenesis, error-prone PCR is a convenient and efficient strategy for generating a diverse pool of mutants (i.e., a mutant library). Error-prone PCR is the method of choice when a researcher seeks to mutate a pre-defined region, such as the coding region of a gene while leaving other genomic regions unaffected. After the mutant library is amplified by error-prone PCR, it must be cloned into a suitable plasmid. The size of the library generated by error-prone PCR is constrained by the efficiency of the cloning step. However, in the fission yeast, Schizosaccharomyces pombe, the cloning step can be replaced by the use of a highly efficient one-step fusion PCR to generate constructs for transformation. Mutants of desired phenotypes may then be selected using appropriate reporters. Here, we describe this strategy in detail, taking as an example, a reporter inserted at centromeric heterochromatin.

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Year:  2018        PMID: 29863659      PMCID: PMC6101219          DOI: 10.3791/57499

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  16 in total

1.  Rapid evolution of novel traits in microorganisms.

Authors:  O Selifonova; F Valle; V Schellenberger
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

Review 2.  Heterochromatin revisited.

Authors:  Shiv I S Grewal; Songtao Jia
Journal:  Nat Rev Genet       Date:  2007-01       Impact factor: 53.242

3.  The 19S proteasome ATPase Sug1 plays a critical role in regulating MHC class II transcription.

Authors:  Kavita P Bhat; Jonathan D Turner; Sarah E Myers; Austin D Cape; Jenny P-Y Ting; Susanna F Greer
Journal:  Mol Immunol       Date:  2008-01-22       Impact factor: 4.407

4.  Random mutagenesis by PCR.

Authors:  D S Wilson; A D Keefe
Journal:  Curr Protoc Mol Biol       Date:  2001-05

5.  The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast.

Authors:  Hogyu David Seo; Yoonjung Choi; Minhoo Kim; Keunsoo Kang; Takeshi Urano; Daeyoup Lee
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

6.  Fission yeast mutants that alleviate transcriptional silencing in centromeric flanking repeats and disrupt chromosome segregation.

Authors:  K Ekwall; G Cranston; R C Allshire
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

7.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

8.  Sug1 modulates yeast transcription activation by Cdc68.

Authors:  Q Xu; R A Singer; G C Johnston
Journal:  Mol Cell Biol       Date:  1995-11       Impact factor: 4.272

9.  In vitro antibacterial activities of phloxine B and other halogenated fluoresceins against methicillin-resistant Staphylococcus aureus.

Authors:  Avraham Rasooly; Adrian Weisz
Journal:  Antimicrob Agents Chemother       Date:  2002-11       Impact factor: 5.191

10.  Tomato 26S Proteasome subunit RPT4a regulates ToLCNDV transcription and activates hypersensitive response in tomato.

Authors:  Pranav Pankaj Sahu; Namisha Sharma; Swati Puranik; Supriya Chakraborty; Manoj Prasad
Journal:  Sci Rep       Date:  2016-06-01       Impact factor: 4.379

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