Literature DB >> 29862376

Cell size control and gene expression homeostasis in single-cells.

Cesar A Vargas-Garcia1, Khem Raj Ghusinga1, Abhyudai Singh1,2,3,4,5.   

Abstract

Growth of a cell and its subsequent division into daughters is a fundamental aspect of all cellular living systems. During these processes, how do individual cells correct size aberrations so that they do not grow abnormally large or small? How do cells ensure that the concentration of essential gene products are maintained at desired levels, in spite of dynamic/stochastic changes in cell size during growth and division? Both these questions have fascinated researchers for over a century. We review how advances in singe-cell technologies and measurements are providing unique insights into these questions across organisms from prokaryotes to human cells. More specifically, diverse strategies based on timing of cell-cycle events, regulating growth, and number of daughters are employed to maintain cell size homeostasis. Interestingly, size homeostasis often results in size optimality - proliferation of individual cells in a population is maximized at an optimal cell size. We further discuss how size-dependent expression or gene-replication timing can buffer concentration of a gene product from cell-to-cell size variations within a population. Finally, we speculate on an intriguing hypothesis that specific size control strategies may have evolved as a consequence of gene-product concentration homeostasis.

Entities:  

Keywords:  Adder; Burst Frequency; Burst Size; Cell size control; Cell-cycle timing; Optimal cell size; mRNA and protein concentration homeostasis

Year:  2018        PMID: 29862376      PMCID: PMC5978733          DOI: 10.1016/j.coisb.2018.01.002

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  52 in total

1.  A coordinated global control over cellular transcription.

Authors:  Jacob Zhurinsky; Klaus Leonhard; Stephen Watt; Samuel Marguerat; Jürg Bähler; Paul Nurse
Journal:  Curr Biol       Date:  2010-10-21       Impact factor: 10.834

2.  A noisy linear map underlies oscillations in cell size and gene expression in bacteria.

Authors:  Yu Tanouchi; Anand Pai; Heungwon Park; Shuqiang Huang; Rumen Stamatov; Nicolas E Buchler; Lingchong You
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

3.  Analysis of Noise Mechanisms in Cell-Size Control.

Authors:  Saurabh Modi; Cesar Augusto Vargas-Garcia; Khem Raj Ghusinga; Abhyudai Singh
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 4.033

4.  Modulation of protein synthesis and degradation maintains proteostasis during yeast growth at different temperatures.

Authors:  Marta Benet; Ana Miguel; Fany Carrasco; Tianlu Li; Jordi Planells; Paula Alepuz; Vicente Tordera; José E Pérez-Ortín
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-04-29       Impact factor: 4.490

5.  Cell-size control and homeostasis in bacteria.

Authors:  Sattar Taheri-Araghi; Serena Bradde; John T Sauls; Norbert S Hill; Petra A Levin; Johan Paulsson; Massimo Vergassola; Suckjoon Jun
Journal:  Curr Biol       Date:  2014-12-24       Impact factor: 10.834

6.  A constant size extension drives bacterial cell size homeostasis.

Authors:  Manuel Campos; Ivan V Surovtsev; Setsu Kato; Ahmad Paintdakhi; Bruno Beltran; Sarah E Ebmeier; Christine Jacobs-Wagner
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

7.  Asymmetric cell division requires specific mechanisms for adjusting global transcription.

Authors:  Adriana Mena; Daniel A Medina; José García-Martínez; Victoria Begley; Abhyudai Singh; Sebastián Chávez; Mari C Muñoz-Centeno; José E Pérez-Ortín
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

8.  The Adder Phenomenon Emerges from Independent Control of Pre- and Post-Start Phases of the Budding Yeast Cell Cycle.

Authors:  Devon Chandler-Brown; Kurt M Schmoller; Yonatan Winetraub; Jan M Skotheim
Journal:  Curr Biol       Date:  2017-09-07       Impact factor: 10.834

9.  A new class of cyclin dependent kinase in Chlamydomonas is required for coupling cell size to cell division.

Authors:  Yubing Li; Dianyi Liu; Cristina López-Paz; Bradley Jsc Olson; James G Umen
Journal:  Elife       Date:  2016-03-25       Impact factor: 8.140

10.  Non-model model organisms.

Authors:  James J Russell; Julie A Theriot; Pranidhi Sood; Wallace F Marshall; Laura F Landweber; Lillian Fritz-Laylin; Jessica K Polka; Snezhana Oliferenko; Therese Gerbich; Amy Gladfelter; James Umen; Magdalena Bezanilla; Madeline A Lancaster; Shuonan He; Matthew C Gibson; Bob Goldstein; Elly M Tanaka; Chi-Kuo Hu; Anne Brunet
Journal:  BMC Biol       Date:  2017-06-29       Impact factor: 7.431

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  17 in total

1.  Stiffness of MDCK II Cells Depends on Confluency and Cell Size.

Authors:  Stefan Nehls; Helen Nöding; Susanne Karsch; Franziska Ries; Andreas Janshoff
Journal:  Biophys J       Date:  2019-05-16       Impact factor: 4.033

2.  RBFOX2-regulated TEAD1 alternative splicing plays a pivotal role in Hippo-YAP signaling.

Authors:  Sunkyung Choi; Hyo Seong Lee; Namjoon Cho; Inyoung Kim; Seongmin Cheon; Chungoo Park; Eun-Mi Kim; Wantae Kim; Kee K Kim
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

3.  Coordination of gene expression noise with cell size: analytical results for agent-based models of growing cell populations.

Authors:  Philipp Thomas; Vahid Shahrezaei
Journal:  J R Soc Interface       Date:  2021-05-26       Impact factor: 4.293

4.  Intrinsic and extrinsic noise of gene expression in lineage trees.

Authors:  Philipp Thomas
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

5.  Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae.

Authors:  Nairita Maitra; Jayamani Anandhakumar; Heidi M Blank; Craig D Kaplan; Michael Polymenis
Journal:  G3 (Bethesda)       Date:  2019-01-09       Impact factor: 3.154

6.  Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells.

Authors:  Zhixing Cao; Ramon Grima
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-18       Impact factor: 11.205

7.  Single-nucleus RNA-seq2 reveals functional crosstalk between liver zonation and ploidy.

Authors:  M L Richter; I K Deligiannis; K Yin; A Danese; E Lleshi; P Coupland; C A Vallejos; K P Matchett; N C Henderson; M Colome-Tatche; C P Martinez-Jimenez
Journal:  Nat Commun       Date:  2021-07-12       Impact factor: 14.919

8.  Efficient computation of stochastic cell-size transient dynamics.

Authors:  Cesar Augusto Nieto-Acuna; Cesar Augusto Vargas-Garcia; Abhyudai Singh; Juan Manuel Pedraza
Journal:  BMC Bioinformatics       Date:  2019-12-27       Impact factor: 3.169

Review 9.  The Application of Single-Cell RNA Sequencing in Vaccinology.

Authors:  Andrés Noé; Tamsin N Cargill; Carolyn M Nielsen; Andrew J C Russell; Eleanor Barnes
Journal:  J Immunol Res       Date:  2020-08-06       Impact factor: 4.818

10.  Modeling homeostasis mechanisms that set the target cell size.

Authors:  Cesar A Vargas-Garcia; Mikael Björklund; Abhyudai Singh
Journal:  Sci Rep       Date:  2020-08-18       Impact factor: 4.379

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