Literature DB >> 29860641

Fitting of dynamic recurrent neural network models to sensory stimulus-response data.

R Ozgur Doruk1, Kechen Zhang2.   

Abstract

We present a theoretical study aiming at model fitting for sensory neurons. Conventional neural network training approaches are not applicable to this problem due to lack of continuous data. Although the stimulus can be considered as a smooth time-dependent variable, the associated response will be a set of neural spike timings (roughly the instants of successive action potential peaks) that have no amplitude information. A recurrent neural network model can be fitted to such a stimulus-response data pair by using the maximum likelihood estimation method where the likelihood function is derived from Poisson statistics of neural spiking. The universal approximation feature of the recurrent dynamical neuron network models allows us to describe excitatory-inhibitory characteristics of an actual sensory neural network with any desired number of neurons. The stimulus data are generated by a phased cosine Fourier series having a fixed amplitude and frequency but a randomly shot phase. Various values of amplitude, stimulus component size, and sample size are applied in order to examine the effect of the stimulus to the identification process. Results are presented in tabular and graphical forms at the end of this text. In addition, to demonstrate the success of this research, a study involving the same model, nominal parameters and stimulus structure, and another study that works on different models are compared to that of this research.

Keywords:  Excitatory neuron; Inhibitory neuron; Maximum likelihood estimation; Neural spiking; Recurrent neural network; Sensory neurons

Mesh:

Year:  2018        PMID: 29860641      PMCID: PMC6082798          DOI: 10.1007/s10867-018-9501-z

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  24 in total

1.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

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Authors:  Anne C Smith; Emery N Brown
Journal:  Neural Comput       Date:  2003-05       Impact factor: 2.026

3.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

4.  Mathematical equivalence of two common forms of firing rate models of neural networks.

Authors:  Kenneth D Miller; Francesco Fumarola
Journal:  Neural Comput       Date:  2011-10-24       Impact factor: 2.026

Review 5.  Modeling single-neuron dynamics and computations: a balance of detail and abstraction.

Authors:  Andreas V M Herz; Tim Gollisch; Christian K Machens; Dieter Jaeger
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

6.  Kernel bandwidth optimization in spike rate estimation.

Authors:  Hideaki Shimazaki; Shigeru Shinomoto
Journal:  J Comput Neurosci       Date:  2009-08-05       Impact factor: 1.621

7.  Modeling inhibition of type II units in the dorsal cochlear nucleus.

Authors:  K E Hancock; K A Davis; H F Voigt
Journal:  Biol Cybern       Date:  1997-06       Impact factor: 2.086

8.  Maximum likelihood identification of neural point process systems.

Authors:  E S Chornoboy; L P Schramm; A F Karr
Journal:  Biol Cybern       Date:  1988       Impact factor: 2.086

Review 9.  Noise, neural codes and cortical organization.

Authors:  M N Shadlen; W T Newsome
Journal:  Curr Opin Neurobiol       Date:  1994-08       Impact factor: 6.627

10.  Electrical synapses between inhibitory neurons shape the responses of principal neurons to transient inputs in the thalamus: a modeling study.

Authors:  Tuan Pham; Julie S Haas
Journal:  Sci Rep       Date:  2018-05-17       Impact factor: 4.379

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  2 in total

1.  Adaptive Stimulus Design for Dynamic Recurrent Neural Network Models.

Authors:  R Ozgur Doruk; Kechen Zhang
Journal:  Front Neural Circuits       Date:  2019-01-22       Impact factor: 3.492

2.  Estimating the Parameters of Fitzhugh-Nagumo Neurons from Neural Spiking Data.

Authors:  Resat Ozgur Doruk; Laila Abosharb
Journal:  Brain Sci       Date:  2019-12-09
  2 in total

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