Literature DB >> 29858697

Towards Accurate Simulation of Two-Dimensional Electronic Spectroscopy.

Javier Segarra-Martí1, Shaul Mukamel2, Marco Garavelli3, Artur Nenov3, Ivan Rivalta4.   

Abstract

We introduce the basic concepts of two-dimensional electronic spectroscopy (2DES) and a general theoretical framework adopted to calculate, from first principles, the nonlinear response of multi-chromophoric systems in realistic environments. Specifically, we focus on UV-active chromophores representing the building blocks of biological systems, from proteins to nucleic acids, describing our progress in developing computational tools and protocols for accurate simulation of their 2DUV spectra. The roadmap for accurate 2DUV spectroscopy simulations is illustrated starting with benchmarking of the excited-state manifold of the chromophoric units in a vacuum, which can be used for building exciton Hamiltonians for large-scale applications or as a reference for first-principles simulations with reduced computational cost, enabling treatment of minimal (still realistic) multi-chromophoric model systems. By adopting a static approximation that neglects dynamic processes such as spectral diffusion and population transfer, we show how 2DUV is able to characterize the ground-state conformational space of dinucleosides and small peptides comprising dimeric chromophoric units (in their native environment) by tracking inter-chromophoric electronic couplings. Recovering the excited-state coherent vibrational dynamics and population transfers, we observe a remarkable agreement between the predicted 2DUV spectra of the pyrene molecule and the experimental results. These results further led to theoretical studies of the excited-state dynamics in a solvated dinucleoside system, showing that spectroscopic fingerprints of long-lived excited-state minima along the complex photoinduced decay pathways of DNA/RNA model systems can be simulated at a reasonable computational cost. Our results exemplify the impact of accurate simulation of 2DES spectra in revealing complex physicochemical properties of fundamental biological systems and should trigger further theoretical developments as well as new experiments.

Entities:  

Keywords:  Aromatic amino acids; DNA/RNA nucleobases; Nonlinear electronic spectroscopy; QM/MM computations; Theoretical simulations; Wavefunction methods

Year:  2018        PMID: 29858697     DOI: 10.1007/s41061-018-0201-8

Source DB:  PubMed          Journal:  Top Curr Chem (Cham)        ISSN: 2364-8961


  5 in total

1.  Pyrene, a Test Case for Deep-Ultraviolet Molecular Photophysics.

Authors:  Alessandra Picchiotti; Artur Nenov; Angelo Giussani; Valentyn I Prokhorenko; R J Dwayne Miller; Shaul Mukamel; Marco Garavelli
Journal:  J Phys Chem Lett       Date:  2019-06-11       Impact factor: 6.475

2.  Molecular Vertical Excitation Energies Studied with First-Order RASSCF (RAS[1,1]): Balancing Covalent and Ionic Excited States.

Authors:  Thierry Tran; Javier Segarra-Martí; Michael J Bearpark; Michael A Robb
Journal:  J Phys Chem A       Date:  2019-06-13       Impact factor: 2.781

3.  Finite-Temperature, Anharmonicity, and Duschinsky Effects on the Two-Dimensional Electronic Spectra from Ab Initio Thermo-Field Gaussian Wavepacket Dynamics.

Authors:  Tomislav Begušić; Jiří Vaníček
Journal:  J Phys Chem Lett       Date:  2021-03-18       Impact factor: 6.475

Review 4.  Synergistic Approach of Ultrafast Spectroscopy and Molecular Simulations in the Characterization of Intramolecular Charge Transfer in Push-Pull Molecules.

Authors:  Barbara Patrizi; Concetta Cozza; Adriana Pietropaolo; Paolo Foggi; Mario Siciliani de Cumis
Journal:  Molecules       Date:  2020-01-20       Impact factor: 4.411

5.  Modelling Photoionisation in Isocytosine: Potential Formation of Longer-Lived Excited State Cations in its Keto Form.

Authors:  Javier Segarra-Martí; Michael J Bearpark
Journal:  Chemphyschem       Date:  2021-09-07       Impact factor: 3.102

  5 in total

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