Literature DB >> 29856610

Molecular Dynamics Simulations of Supramolecular Anticancer Nanotubes.

Myungshim Kang1, Kaushik Chakraborty1, Sharon M Loverde1,2.   

Abstract

We report here on long-time all-atomistic molecular dynamics simulations of functional supramolecular nanotubes composed by the self-assembly of peptide-drug amphiphiles (DAs). These DAs have been shown to possess an inherently high drug loading of the hydrophobic anticancer drug camptothecin. We probe the self-assembly mechanism from random with ∼0.4 μs molecular dynamics simulations. Furthermore, we also computationally characterize the interfacial structure, directionality of π-π stacking, and water dynamics within several peptide-drug nanotubes with diameters consistent with the reported experimental nanotube diameter. Insight gained should inform the future design of these novel anticancer drug delivery systems.

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Year:  2018        PMID: 29856610      PMCID: PMC6261261          DOI: 10.1021/acs.jcim.8b00193

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  25 in total

1.  Gating and Intermolecular Interactions in Ligand-Protein Association: Coarse-Grained Modeling of HIV-1 Protease.

Authors:  Myungshim Kang; Christopher Roberts; Yuhui Cheng; Chia-En A Chang
Journal:  J Chem Theory Comput       Date:  2011-09-14       Impact factor: 6.006

2.  Self-assembly of chiral tubules.

Authors:  Shengfeng Cheng; Mark J Stevens
Journal:  Soft Matter       Date:  2014-01-21       Impact factor: 3.679

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Molecular simulation study of peptide amphiphile self-assembly.

Authors:  Yuri S Velichko; Samuel I Stupp; Monica Olvera de la Cruz
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

5.  High-resolution microtubule structures reveal the structural transitions in αβ-tubulin upon GTP hydrolysis.

Authors:  Gregory M Alushin; Gabriel C Lander; Elizabeth H Kellogg; Rui Zhang; David Baker; Eva Nogales
Journal:  Cell       Date:  2014-05-22       Impact factor: 41.582

6.  Modeling the self-assembly of peptide amphiphiles into fibers using coarse-grained molecular dynamics.

Authors:  One-Sun Lee; Vince Cho; George C Schatz
Journal:  Nano Lett       Date:  2012-08-31       Impact factor: 11.189

7.  Self-assembling organic nanotubes based on a cyclic peptide architecture.

Authors:  M R Ghadiri; J R Granja; R A Milligan; D E McRee; N Khazanovich
Journal:  Nature       Date:  1993-11-25       Impact factor: 49.962

8.  Pulsating tubules from noncovalent macrocycles.

Authors:  Zhegang Huang; Seong-Kyun Kang; Motonori Banno; Tomoko Yamaguchi; Dongseon Lee; Chaok Seok; Eiji Yashima; Myongsoo Lee
Journal:  Science       Date:  2012-09-21       Impact factor: 47.728

9.  A heterocyclic peptide nanotube.

Authors:  W Seth Horne; C David Stout; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2003-08-06       Impact factor: 15.419

10.  Supramolecular nanostructures formed by anticancer drug assembly.

Authors:  Andrew G Cheetham; Pengcheng Zhang; Yi-an Lin; Lye Lin Lock; Honggang Cui
Journal:  J Am Chem Soc       Date:  2013-02-13       Impact factor: 15.419

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  2 in total

1.  The Interaction of Supramolecular Anticancer Drug Amphiphiles with Phospholipid Membranes.

Authors:  Phu K Tang; Anjela Manandhar; William Hu; Myungshim Kang; Sharon M Loverde
Journal:  Nanoscale Adv       Date:  2020-10-26

2.  The design and synthesis of dextran-doxorubicin prodrug-based pH-sensitive drug delivery system for improving chemotherapy efficacy.

Authors:  Xiaoli Zhang; Tian Zhang; Xianbin Ma; Yajun Wang; Yi Lu; Die Jia; Xiaohua Huang; Jiucun Chen; Zhigang Xu; Feiqiu Wen
Journal:  Asian J Pharm Sci       Date:  2019-11-06       Impact factor: 6.598

  2 in total

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