Literature DB >> 29855777

Identification of a recombinant isolate of ungulate copiparvovirus.

Ming Li1,2,3, Jing Yang4, Tian-Fei Yu5,6.   

Abstract

To evaluate the status of parvovirus infection in free-range cows in a region of northeast China, nine serum samples were collected and analysed by sequencing and polymerase chain reaction. A new bovine parvovirus-2 (BPV2) was identified and named QQHE16. The genome of the virus is 5759 nucleotides long and retains two ORFs that are typical of the Parvovirinae family. Compared with reference BPV2 strains, BPV2 QQHE16 appeared to have a close relationship with strain BSRI isolated in the USA in 2013. A putative recombination breakpoint located at nucleotide position 2121 and in the interval between the non-structural gene and the VP gene was identified. From our analysis, we propose that strain QQHE16 originates from the natural recombination of strains ujs2665 and BSRI.

Entities:  

Keywords:  Bovine parvovirus 2; Complete genomic sequence; Copiparvovirus; Recombination; Sera samples

Mesh：

Substances：

Year:  2018        PMID： 29855777     DOI： 10.1007/s11262-018-1575-y

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  9 in total

1.  A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species.

Authors:  T Allander; S U Emerson; R E Engle; R H Purcell; J Bukh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-18       Impact factor: 11.205

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  SEQMAN. Contig assembly.

Authors:  S R Swindell; T N Plasterer
Journal:  Methods Mol Biol       Date:  1997

4.  A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.

Authors:  Terry Fei Fan Ng; Nikola O Kondov; Xutao Deng; Alison Van Eenennaam; Holly L Neibergs; Eric Delwart
Journal:  J Virol       Date:  2015-03-04       Impact factor: 5.103

5.  Ungulate copiparvovirus 1 (bovine parvovirus 2): characterization of a new genotype and associated viremia in different bovine age groups.

Authors:  Samuel Paulo Cibulski; Thais Fumaco Teixeira; Helton Fernandes Dos Santos; Francisco Esmaile de Sales Lima; Camila Mengue Scheffer; Ana Paula Muterle Varela; Diane Alves de Lima; Candice Schmidt; Fernando Silveira; Laura Lopes de Almeida; Paulo Michel Roehe
Journal:  Virus Genes       Date:  2015-12-08       Impact factor: 2.332

6.  Genetic complexity and multiple infections with more Parvovirus species in naturally infected cats.

Authors:  Mara Battilani; Andrea Balboni; Martina Ustulin; Massimo Giunti; Alessandra Scagliarini; Santino Prosperi
Journal:  Vet Res       Date:  2011-03-02       Impact factor: 3.683

Review 7.  Recombination in eukaryotic single stranded DNA viruses.

Authors:  Darren P Martin; Philippe Biagini; Pierre Lefeuvre; Michael Golden; Philippe Roumagnac; Arvind Varsani
Journal:  Viruses       Date:  2011-09-13       Impact factor: 5.048

8.  The family Parvoviridae.

Authors:  Susan F Cotmore; Mavis Agbandje-McKenna; John A Chiorini; Dmitry V Mukha; David J Pintel; Jianming Qiu; Maria Soderlund-Venermo; Peter Tattersall; Peter Tijssen; Derek Gatherer; Andrew J Davison
Journal:  Arch Virol       Date:  2013-11-09       Impact factor: 2.574

9.  Plasma virome of cattle from forest region revealed diverse small circular ssDNA viral genomes.

Authors:  Hao Wang; Shouxin Li; Asif Mahmood; Shixing Yang; Xiaochun Wang; Quan Shen; Tongling Shan; Xutao Deng; Jingjiao Li; Xiuguo Hua; Li Cui; Eric Delwart; Wen Zhang
Journal:  Virol J       Date:  2018-01-15       Impact factor: 4.099
  9 in total

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