Literature DB >> 29855570

MaxQuant goes Linux.

Pavel Sinitcyn1, Shivani Tiwary1, Jan Rudolph1, Petra Gutenbrunner1, Christoph Wichmann1, Şule Yılmaz1, Hamid Hamzeiy1, Favio Salinas1, Jürgen Cox2.   

Abstract

Mesh：

Year:  2018        PMID： 29855570     DOI： 10.1038/s41592-018-0018-y

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  16 in total

1.  ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.

Authors:  Niels Hulstaert; Jim Shofstahl; Timo Sachsenberg; Mathias Walzer; Harald Barsnes; Lennart Martens; Yasset Perez-Riverol
Journal:  J Proteome Res       Date:  2019-12-06       Impact factor: 4.466

Review 2.  Prediction of peptide mass spectral libraries with machine learning.

Authors:  Jürgen Cox
Journal:  Nat Biotechnol       Date:  2022-08-25       Impact factor: 68.164

3.  Optimizing Accuracy and Depth of Protein Quantification in Experiments Using Isobaric Carriers.

Authors:  Harrison Specht; Nikolai Slavov
Journal:  J Proteome Res       Date:  2020-11-14       Impact factor: 4.466

4.  Spritz: A Proteogenomic Database Engine.

Authors:  Anthony J Cesnik; Rachel M Miller; Khairina Ibrahim; Lei Lu; Robert J Millikin; Michael R Shortreed; Brian L Frey; Lloyd M Smith
Journal:  J Proteome Res       Date:  2020-10-07       Impact factor: 4.466

5.  Software Options for the Analysis of MS-Proteomic Data.

Authors:  Avinash Yadav; Federica Marini; Alessandro Cuomo; Tiziana Bonaldi
Journal:  Methods Mol Biol       Date:  2021

6.  Cloudy with a Chance of Peptides: Accessibility, Scalability, and Reproducibility with Cloud-Hosted Environments.

Authors:  Benjamin A Neely
Journal:  J Proteome Res       Date:  2021-01-29       Impact factor: 4.466

7.  MaxDIA enables library-based and library-free data-independent acquisition proteomics.

Authors:  Pavel Sinitcyn; Hamid Hamzeiy; Favio Salinas Soto; Daniel Itzhak; Frank McCarthy; Christoph Wichmann; Martin Steger; Uli Ohmayer; Ute Distler; Stephanie Kaspar-Schoenefeld; Nikita Prianichnikov; Şule Yılmaz; Jan Daniel Rudolph; Stefan Tenzer; Yasset Perez-Riverol; Nagarjuna Nagaraj; Sean J Humphrey; Jürgen Cox
Journal:  Nat Biotechnol       Date:  2021-07-08       Impact factor: 68.164

8.  Focus on the spectra that matter by clustering of quantification data in shotgun proteomics.

Authors:  Matthew The; Lukas Käll
Journal:  Nat Commun       Date:  2020-06-26       Impact factor: 14.919

9.  A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis.

Authors:  Jan Daniel Rudolph; Jürgen Cox
Journal:  J Proteome Res       Date:  2019-04-10       Impact factor: 4.466

10.  ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.

Authors:  Paolo Cifani; Avantika Dhabaria; Zining Chen; Akihide Yoshimi; Emily Kawaler; Omar Abdel-Wahab; John T Poirier; Alex Kentsis
Journal:  J Proteome Res       Date:  2018-10-19       Impact factor: 4.466
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