Literature DB >> 29854217

A Semantic Parsing Method for Mapping Clinical Questions to Logical Forms.

Kirk Roberts1, Braja Gopal Patra1.   

Abstract

This paper presents a method for converting natural language questions about structured data in the electronic health record (EHR) into logical forms. The logical forms can then subsequently be converted to EHR-dependent structured queries. The natural language processing task, known as semantic parsing, has the potential to convert questions to logical forms with extremely high precision, resulting in a system that is usable and trusted by clinicians for real-time use in clinical settings. We propose a hybrid semantic parsing method, combining rule-based methods with a machine learning-based classifier. The overall semantic parsing precision on a set of 212 questions is 95.6%. The parser's rules furthermore allow it to "know what it does not know", enabling the system to indicate when unknown terms prevent it from understanding the question's full logical structure. When combined with a module for converting a logical form into an EHR-dependent query, this high-precision approach allows for a question answering system to provide a user with a single, verifiably correct answer.

Mesh:

Year:  2018        PMID: 29854217      PMCID: PMC5977685     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  19 in total

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4.  Development and empirical user-centered evaluation of semantically-based query recommendation for an electronic health record search engine.

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Journal:  J Biomed Inform       Date:  2017-01-25       Impact factor: 6.317

Review 5.  Clinical questions raised by clinicians at the point of care: a systematic review.

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Journal:  JAMA Intern Med       Date:  2014-05       Impact factor: 21.873

6.  Interactive use of online health resources: a comparison of consumer and professional questions.

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Journal:  J Am Med Inform Assoc       Date:  2016-05-04       Impact factor: 4.497

Review 7.  Biomedical informatics advancing the national health agenda: the AMIA 2015 year-in-review in clinical and consumer informatics.

Authors:  Kirk Roberts; Mary Regina Boland; Lisiane Pruinelli; Jina Dcruz; Andrew Berry; Mattias Georgsson; Rebecca Hazen; Raymond F Sarmiento; Uba Backonja; Kun-Hsing Yu; Yun Jiang; Patricia Flatley Brennan
Journal:  J Am Med Inform Assoc       Date:  2017-04-01       Impact factor: 4.497

8.  Toward a Natural Language Interface for EHR Questions.

Authors:  Kirk Roberts; Dina Demner-Fushman
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2015-03-25

9.  SemanticFind: Locating What You Want in a Patient Record, Not Just What You Ask For.

Authors:  John M Prager; Jennifer J Liang; Murthy V Devarakonda
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2017-07-26

10.  Towards comprehensive syntactic and semantic annotations of the clinical narrative.

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Journal:  J Am Med Inform Assoc       Date:  2013-01-25       Impact factor: 4.497

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  2 in total

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2.  A BERT-Based Generation Model to Transform Medical Texts to SQL Queries for Electronic Medical Records: Model Development and Validation.

Authors:  Youcheng Pan; Chenghao Wang; Baotian Hu; Yang Xiang; Xiaolong Wang; Qingcai Chen; Junjie Chen; Jingcheng Du
Journal:  JMIR Med Inform       Date:  2021-12-08
  2 in total

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