Literature DB >> 29854115

Combining rules, background knowledge and change patterns to maintain semantic annotations.

Silvio Domingos Cardoso1,2, Reynaud-Delaître Chantal2, Marcos Da Silveira1, Cédric Pruski1.   

Abstract

Knowledge Organization Systems (KOS) play a key role in enriching biomedical information in order to make it machine-understandable and shareable. This is done by annotating medical documents, or more specifically, associating concept labels from KOS with pieces of digital information, e.g., images or texts. However, the dynamic nature of KOS may impact the annotations, thus creating a mismatch between the evolved concept and the associated information. To solve this problem, methods to maintain the quality of the annotations are required. In this paper, we define a framework based on rules, background knowledge and change patterns to drive the annotation adaption process. We evaluate experimentally the proposed approach in realistic cases-studies and demonstrate the overall performance of our approach in different KOS considering the precision, recall, F1-score and AUC value of the system.

Mesh:

Year:  2018        PMID: 29854115      PMCID: PMC5977713     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

1.  Recognizing lexical and semantic change patterns in evolving life science ontologies to inform mapping adaptation.

Authors:  Julio Cesar Dos Reis; Duy Dinh; Marcos Da Silveira; Cédric Pruski; Chantal Reynaud-Delaître
Journal:  Artif Intell Med       Date:  2014-12-06       Impact factor: 5.326

2.  Biomedical ontologies in action: role in knowledge management, data integration and decision support.

Authors:  O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

3.  COnto-Diff: generation of complex evolution mappings for life science ontologies.

Authors:  Michael Hartung; Anika Groß; Erhard Rahm
Journal:  J Biomed Inform       Date:  2012-05-08       Impact factor: 6.317

Review 4.  Receiver Operating Characteristic (ROC) Curve Analysis for Medical Diagnostic Test Evaluation.

Authors:  Karimollah Hajian-Tilaki
Journal:  Caspian J Intern Med       Date:  2013

5.  NCBI disease corpus: a resource for disease name recognition and concept normalization.

Authors:  Rezarta Islamaj Doğan; Robert Leaman; Zhiyong Lu
Journal:  J Biomed Inform       Date:  2014-01-03       Impact factor: 6.317

6.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

7.  Optimization of gene set annotations via entropy minimization over variable clusters (EMVC).

Authors:  H Robert Frost; Jason H Moore
Journal:  Bioinformatics       Date:  2014-02-25       Impact factor: 6.937

  7 in total

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