Literature DB >> 29851258

The evolution of posttranscriptional regulation.

Bernhard Schaefke1, Wei Sun1,2, Yi-Sheng Li1, Liang Fang1,3, Wei Chen1,3.   

Abstract

"DNA makes RNA makes protein." After transcription, mRNAs undergo a series of intertwining processes to be finally translated into functional proteins. The "posttranscriptional" regulation (PTR) provides cells an extended option to fine-tune their proteomes. To meet the demands of complex organism development and the appropriate response to environmental stimuli, every step in these processes needs to be finely regulated. Moreover, changes in these regulatory processes are important driving forces underlying the evolution of phenotypic differences across different species. The major PTR mechanisms discussed in this review include the regulation of splicing, polyadenylation, decay, and translation. For alternative splicing and polyadenylation, we mainly discuss their evolutionary dynamics and the genetic changes underlying the regulatory differences in cis-elements versus trans-factors. For mRNA decay and translation, which, together with transcription, determine the cellular RNA or protein abundance, we focus our discussion on how their divergence coordinates with transcriptional changes to shape the evolution of gene expression. Then to highlight the importance of PTR in the evolution of higher complexity, we focus on their roles in two major phenomena during eukaryotic evolution: the evolution of multicellularity and the division of labor between different cell types and tissues; and the emergence of diverse, often highly specialized individual phenotypes, especially those concerning behavior in eusocial insects. This article is categorized under: RNA Evolution and Genomics > RNA and Ribonucleoprotein Evolution Translation > Translation Regulation RNA Processing > Splicing Regulation/Alternative Splicing.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  alternative splicing and polyadenylation; evolution; mRNA decay; posttranscriptional regulation; translation

Year:  2018        PMID: 29851258     DOI: 10.1002/wrna.1485

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  10 in total

Review 1.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

2.  Highly dynamic transcriptional reprogramming and shorter isoform shifts under acute stresses during biological invasions.

Authors:  Xuena Huang; Aibin Zhan
Journal:  RNA Biol       Date:  2020-08-17       Impact factor: 4.652

3.  Resolving the Microalgal Gene Landscape at the Strain Level: a Novel Hybrid Transcriptome of Emiliania huxleyi CCMP3266.

Authors:  Martin Sperfeld; Dayana Yahalomi; Einat Segev
Journal:  Appl Environ Microbiol       Date:  2021-11-10       Impact factor: 5.005

Review 4.  Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control.

Authors:  Sarah A Peck; Katlyn D Hughes; Jose F Victorino; Amber L Mosley
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-03-07       Impact factor: 9.957

5.  The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing.

Authors:  Yue Zhang; Tonny Maraga Nyong'A; Tao Shi; Pingfang Yang
Journal:  DNA Res       Date:  2019-08-01       Impact factor: 4.458

6.  An RNA-binding protein complex regulates the purine-dependent expression of a nucleobase transporter in trypanosomes.

Authors:  Miriam Rico-Jiménez; Gloria Ceballos-Pérez; Claudia Gómez-Liñán; Antonio M Estévez
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

7.  Limited expression of non-integrating CpG-free plasmid is associated with increased nucleosome enrichment.

Authors:  Omar Habib; Rozita Mohd Sakri; Nadiah Ghazalli; De-Ming Chau; King-Hwa Ling; Syahril Abdullah
Journal:  PLoS One       Date:  2020-12-21       Impact factor: 3.240

8.  Mammalian splicing divergence is shaped by drift, buffering in trans, and a scaling law.

Authors:  Xudong Zou; Bernhard Schaefke; Yisheng Li; Fujian Jia; Wei Sun; Guipeng Li; Weizheng Liang; Tristan Reif; Florian Heyd; Qingsong Gao; Shuye Tian; Yanping Li; Yisen Tang; Liang Fang; Yuhui Hu; Wei Chen
Journal:  Life Sci Alliance       Date:  2021-12-30

9.  Full-length transcriptome sequencing reveals the molecular mechanism of potato seedlings responding to low-temperature.

Authors:  Chongchong Yan; Nan Zhang; Qianqian Wang; Yuying Fu; Hongyuan Zhao; Jiajia Wang; Gang Wu; Feng Wang; Xueyan Li; Huajun Liao
Journal:  BMC Plant Biol       Date:  2022-03-18       Impact factor: 4.215

10.  Transcriptome and translatome co-evolution in mammals.

Authors:  Zhong-Yi Wang; Evgeny Leushkin; Angélica Liechti; Svetlana Ovchinnikova; Katharina Mößinger; Thoomke Brüning; Coralie Rummel; Frank Grützner; Margarida Cardoso-Moreira; Peggy Janich; David Gatfield; Boubou Diagouraga; Bernard de Massy; Mark E Gill; Antoine H F M Peters; Simon Anders; Henrik Kaessmann
Journal:  Nature       Date:  2020-11-11       Impact factor: 49.962

  10 in total

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