| Literature DB >> 29850098 |
Ísmail Çelik1, Zeliha Atioğlu2, Huseyin Aksit3, Ibrahim Demirtas4, Ramazan Erenler5, Mehmet Akkurt6.
Abstract
The title compound, C20H32O2 (systematic name: 3-ethenyl-3,4a,7,7,10a-penta-methyl-dodeca-hydro-9H-benzo[f]chromen-9-one), was isolated from Sideritis perfoliata. In the crystal, mol-ecules pack in helical supra-molecular chains along the 21 screw axis running parallel to the a axis, bound by C-H⋯O hydrogen bonds. These chains are efficiently inter-locked in the other two unit-cell directions via van der Waals inter-actions. Hirshfeld surface analysis shows that van der Waals inter-actions constitute the major contribution to the inter-molecular inter-actions, with H⋯H contacts accounting for 86.0% of the surface.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; cyclohexane rings; helical supramolecular chains; tetrahydropyran rings
Year: 2018 PMID: 29850098 PMCID: PMC5947494 DOI: 10.1107/S2056989018005807
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling and displacement ellipsoids drawn at the 30% probability level.
Figure 2A view along the a axis of the crystal packing of the title compound. H atoms not involved in these interactions have been omitted for clarity.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C18—H18 | 0.93 | 2.59 | 3.501 (9) | 167 |
Symmetry code: (i) .
Figure 3View of the three-dimensional Hirshfeld surface of the title compound mapped with d norm.
Figure 4The two-dimensional fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) H⋯O and (d) H⋯C interactions [d e and d i represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (internal) the surface, respectively].
Figure 5Hirshfeld surface of the title complex plotted over the shape-index.
Experimental details
| Crystal data | |
| Chemical formula | C20H32O2 |
|
| 304.46 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 7.803 (2), 9.242 (3), 24.952 (7) |
|
| 1799.4 (9) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.07 |
| Crystal size (mm) | 0.12 × 0.11 × 0.09 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.596, 0.745 |
| No. of measured, independent and observed [ | 11666, 3530, 2120 |
|
| 0.097 |
| (sin θ/λ)max (Å−1) | 0.626 |
| Refinement | |
|
| 0.096, 0.186, 1.27 |
| No. of reflections | 3530 |
| No. of parameters | 204 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.21, −0.25 |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C20H32O2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 6426 reflections |
| θ = 3.1–26.4° | |
| µ = 0.07 mm−1 | |
| Block, colourless | |
| 0.12 × 0.11 × 0.09 mm |
| Bruker APEXII CCD diffractometer | 2120 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2007) | θmax = 26.4°, θmin = 3.1° |
| 11666 measured reflections | |
| 3530 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3530 reflections | (Δ/σ)max < 0.001 |
| 204 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > 2sigma(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
| O1 | 0.2335 (5) | 0.8443 (5) | 0.71085 (15) | 0.0343 (16) | |
| O2 | 0.3930 (9) | 0.4214 (6) | 0.47206 (19) | 0.083 (3) | |
| C1 | 0.0977 (8) | 0.9360 (7) | 0.6904 (2) | 0.034 (2) | |
| C2 | 0.0185 (8) | 0.8669 (7) | 0.6406 (2) | 0.037 (2) | |
| C3 | 0.1511 (8) | 0.8173 (7) | 0.5996 (2) | 0.034 (2) | |
| C4 | 0.2784 (8) | 0.7152 (6) | 0.6273 (2) | 0.0247 (19) | |
| C5 | 0.3660 (8) | 0.7939 (6) | 0.6745 (2) | 0.0257 (19) | |
| C6 | 0.4657 (8) | 0.6837 (7) | 0.7072 (2) | 0.036 (2) | |
| C7 | 0.5901 (8) | 0.5959 (7) | 0.6731 (2) | 0.035 (2) | |
| C8 | 0.4971 (9) | 0.5188 (7) | 0.6269 (2) | 0.0310 (19) | |
| C9 | 0.4001 (9) | 0.6277 (6) | 0.5902 (2) | 0.0303 (19) | |
| C10 | 0.2898 (10) | 0.5375 (8) | 0.5505 (2) | 0.044 (3) | |
| C11 | 0.3961 (11) | 0.4285 (8) | 0.5206 (3) | 0.050 (3) | |
| C12 | 0.4981 (10) | 0.3273 (7) | 0.5547 (3) | 0.051 (3) | |
| C13 | 0.6085 (9) | 0.4010 (7) | 0.5985 (3) | 0.038 (2) | |
| C14 | 0.6582 (10) | 0.2831 (8) | 0.6390 (3) | 0.056 (3) | |
| C15 | 0.7747 (11) | 0.4588 (9) | 0.5732 (3) | 0.067 (3) | |
| C16 | 0.4820 (9) | 0.9208 (7) | 0.6596 (3) | 0.040 (2) | |
| C17 | 0.1589 (9) | 1.0879 (7) | 0.6821 (3) | 0.039 (2) | |
| C18 | 0.1195 (10) | 1.1772 (8) | 0.6434 (3) | 0.050 (3) | |
| C19 | −0.0318 (10) | 0.9399 (8) | 0.7360 (3) | 0.059 (3) | |
| C20 | 0.5154 (11) | 0.7268 (7) | 0.5559 (3) | 0.049 (3) | |
| H2A | −0.04990 | 0.78430 | 0.65140 | 0.0440* | |
| H2B | −0.05760 | 0.93630 | 0.62370 | 0.0440* | |
| H3A | 0.21130 | 0.90030 | 0.58510 | 0.0410* | |
| H3B | 0.09470 | 0.76740 | 0.57030 | 0.0410* | |
| H4 | 0.20610 | 0.64180 | 0.64440 | 0.0300* | |
| H6A | 0.38570 | 0.61840 | 0.72450 | 0.0430* | |
| H6B | 0.52920 | 0.73360 | 0.73500 | 0.0430* | |
| H7A | 0.64680 | 0.52460 | 0.69540 | 0.0420* | |
| H7B | 0.67720 | 0.65970 | 0.65850 | 0.0420* | |
| H8 | 0.40580 | 0.46380 | 0.64450 | 0.0370* | |
| H10A | 0.20050 | 0.48750 | 0.57030 | 0.0530* | |
| H10B | 0.23500 | 0.60210 | 0.52520 | 0.0530* | |
| H12A | 0.57310 | 0.27130 | 0.53160 | 0.0610* | |
| H12B | 0.41990 | 0.26020 | 0.57190 | 0.0610* | |
| H14A | 0.55750 | 0.25030 | 0.65750 | 0.0840* | |
| H14B | 0.73820 | 0.32210 | 0.66440 | 0.0840* | |
| H14C | 0.70990 | 0.20330 | 0.62040 | 0.0840* | |
| H15A | 0.83750 | 0.51340 | 0.59950 | 0.1000* | |
| H15B | 0.74710 | 0.52010 | 0.54340 | 0.1000* | |
| H15C | 0.84340 | 0.37910 | 0.56110 | 0.1000* | |
| H16A | 0.42730 | 0.97830 | 0.63240 | 0.0600* | |
| H16B | 0.58910 | 0.88470 | 0.64610 | 0.0600* | |
| H16C | 0.50240 | 0.97930 | 0.69070 | 0.0600* | |
| H17 | 0.23470 | 1.12310 | 0.70770 | 0.0470* | |
| H18A | 0.04430 | 1.14840 | 0.61660 | 0.0600* | |
| H18B | 0.16670 | 1.26960 | 0.64280 | 0.0600* | |
| H19A | −0.07240 | 0.84370 | 0.74300 | 0.0890* | |
| H19B | −0.12660 | 1.00050 | 0.72610 | 0.0890* | |
| H19C | 0.02180 | 0.97810 | 0.76760 | 0.0890* | |
| H20A | 0.44920 | 0.80690 | 0.54280 | 0.0740* | |
| H20B | 0.56040 | 0.67290 | 0.52620 | 0.0740* | |
| H20C | 0.60830 | 0.76240 | 0.57740 | 0.0740* |
| O1 | 0.032 (3) | 0.044 (3) | 0.027 (2) | 0.010 (2) | 0.0025 (19) | 0.000 (2) |
| O2 | 0.132 (6) | 0.082 (4) | 0.035 (3) | −0.004 (4) | 0.005 (3) | −0.019 (3) |
| C1 | 0.025 (4) | 0.040 (4) | 0.038 (3) | 0.001 (3) | 0.002 (3) | 0.001 (3) |
| C2 | 0.025 (4) | 0.039 (4) | 0.047 (4) | −0.002 (3) | −0.005 (3) | 0.000 (3) |
| C3 | 0.032 (4) | 0.040 (4) | 0.030 (3) | 0.003 (3) | −0.014 (3) | 0.000 (3) |
| C4 | 0.022 (3) | 0.031 (4) | 0.021 (3) | −0.010 (3) | −0.002 (3) | 0.000 (3) |
| C5 | 0.023 (3) | 0.027 (4) | 0.027 (3) | 0.002 (3) | −0.003 (3) | −0.006 (3) |
| C6 | 0.039 (4) | 0.041 (4) | 0.028 (3) | 0.007 (4) | −0.011 (3) | −0.003 (3) |
| C7 | 0.025 (4) | 0.038 (4) | 0.043 (4) | 0.004 (3) | −0.007 (3) | −0.003 (3) |
| C8 | 0.030 (4) | 0.030 (3) | 0.033 (3) | 0.003 (3) | 0.008 (3) | 0.000 (3) |
| C9 | 0.041 (4) | 0.028 (3) | 0.022 (3) | −0.005 (3) | 0.001 (3) | −0.002 (3) |
| C10 | 0.051 (5) | 0.046 (5) | 0.035 (4) | 0.000 (4) | −0.010 (3) | −0.002 (3) |
| C11 | 0.066 (5) | 0.042 (4) | 0.042 (4) | −0.010 (4) | 0.004 (4) | −0.017 (4) |
| C12 | 0.058 (5) | 0.040 (4) | 0.054 (4) | 0.000 (4) | 0.010 (4) | −0.016 (4) |
| C13 | 0.033 (4) | 0.033 (4) | 0.049 (4) | −0.003 (3) | 0.007 (3) | −0.004 (3) |
| C14 | 0.056 (5) | 0.037 (4) | 0.076 (6) | 0.016 (4) | 0.004 (4) | −0.002 (4) |
| C15 | 0.052 (5) | 0.063 (6) | 0.086 (6) | 0.004 (5) | 0.029 (5) | −0.011 (5) |
| C16 | 0.031 (4) | 0.035 (4) | 0.055 (4) | −0.005 (4) | 0.000 (3) | −0.007 (3) |
| C17 | 0.034 (4) | 0.035 (4) | 0.048 (4) | 0.006 (3) | −0.003 (3) | −0.005 (4) |
| C18 | 0.043 (5) | 0.039 (4) | 0.068 (5) | 0.001 (4) | 0.004 (4) | 0.000 (4) |
| C19 | 0.053 (5) | 0.068 (5) | 0.057 (5) | 0.017 (5) | 0.024 (4) | 0.005 (4) |
| C20 | 0.070 (6) | 0.040 (4) | 0.038 (4) | 0.004 (4) | 0.024 (4) | 0.004 (3) |
| O1—C1 | 1.450 (7) | C4—H4 | 0.9800 |
| O1—C5 | 1.452 (7) | C6—H6A | 0.9700 |
| O2—C11 | 1.213 (9) | C6—H6B | 0.9700 |
| C1—C2 | 1.528 (8) | C7—H7A | 0.9700 |
| C1—C17 | 1.497 (9) | C7—H7B | 0.9700 |
| C1—C19 | 1.522 (9) | C8—H8 | 0.9800 |
| C2—C3 | 1.526 (8) | C10—H10A | 0.9700 |
| C3—C4 | 1.535 (8) | C10—H10B | 0.9700 |
| C4—C5 | 1.544 (8) | C12—H12A | 0.9700 |
| C4—C9 | 1.553 (8) | C12—H12B | 0.9700 |
| C5—C6 | 1.519 (8) | C14—H14A | 0.9600 |
| C5—C16 | 1.527 (9) | C14—H14B | 0.9600 |
| C6—C7 | 1.525 (8) | C14—H14C | 0.9600 |
| C7—C8 | 1.537 (8) | C15—H15A | 0.9600 |
| C8—C9 | 1.557 (8) | C15—H15B | 0.9600 |
| C8—C13 | 1.563 (9) | C15—H15C | 0.9600 |
| C9—C10 | 1.555 (9) | C16—H16A | 0.9600 |
| C9—C20 | 1.543 (10) | C16—H16B | 0.9600 |
| C10—C11 | 1.503 (10) | C16—H16C | 0.9600 |
| C11—C12 | 1.494 (11) | C17—H17 | 0.9300 |
| C12—C13 | 1.549 (10) | C18—H18A | 0.9300 |
| C13—C14 | 1.536 (10) | C18—H18B | 0.9300 |
| C13—C15 | 1.538 (11) | C19—H19A | 0.9600 |
| C17—C18 | 1.307 (10) | C19—H19B | 0.9600 |
| C2—H2A | 0.9700 | C19—H19C | 0.9600 |
| C2—H2B | 0.9700 | C20—H20A | 0.9600 |
| C3—H3A | 0.9700 | C20—H20B | 0.9600 |
| C3—H3B | 0.9700 | C20—H20C | 0.9600 |
| C1—O1—C5 | 119.2 (4) | C7—C6—H6A | 109.00 |
| O1—C1—C2 | 109.7 (5) | C7—C6—H6B | 109.00 |
| O1—C1—C17 | 111.3 (5) | H6A—C6—H6B | 108.00 |
| O1—C1—C19 | 103.7 (5) | C6—C7—H7A | 109.00 |
| C2—C1—C17 | 114.1 (5) | C6—C7—H7B | 109.00 |
| C2—C1—C19 | 110.5 (5) | C8—C7—H7A | 109.00 |
| C17—C1—C19 | 107.0 (5) | C8—C7—H7B | 109.00 |
| C1—C2—C3 | 113.4 (5) | H7A—C7—H7B | 108.00 |
| C2—C3—C4 | 108.8 (4) | C7—C8—H8 | 104.00 |
| C3—C4—C5 | 109.9 (5) | C9—C8—H8 | 104.00 |
| C3—C4—C9 | 116.6 (4) | C13—C8—H8 | 104.00 |
| C5—C4—C9 | 115.4 (5) | C9—C10—H10A | 109.00 |
| O1—C5—C4 | 108.2 (5) | C9—C10—H10B | 109.00 |
| O1—C5—C6 | 104.1 (4) | C11—C10—H10A | 109.00 |
| O1—C5—C16 | 109.1 (5) | C11—C10—H10B | 109.00 |
| C4—C5—C6 | 108.7 (5) | H10A—C10—H10B | 108.00 |
| C4—C5—C16 | 116.0 (5) | C11—C12—H12A | 108.00 |
| C6—C5—C16 | 110.0 (5) | C11—C12—H12B | 108.00 |
| C5—C6—C7 | 112.5 (4) | C13—C12—H12A | 109.00 |
| C6—C7—C8 | 111.4 (5) | C13—C12—H12B | 109.00 |
| C7—C8—C9 | 111.8 (5) | H12A—C12—H12B | 108.00 |
| C7—C8—C13 | 113.6 (6) | C13—C14—H14A | 109.00 |
| C9—C8—C13 | 117.0 (5) | C13—C14—H14B | 109.00 |
| C4—C9—C8 | 106.5 (4) | C13—C14—H14C | 109.00 |
| C4—C9—C10 | 108.7 (5) | H14A—C14—H14B | 109.00 |
| C4—C9—C20 | 112.2 (5) | H14A—C14—H14C | 109.00 |
| C8—C9—C10 | 107.3 (5) | H14B—C14—H14C | 110.00 |
| C8—C9—C20 | 115.2 (6) | C13—C15—H15A | 109.00 |
| C10—C9—C20 | 106.7 (5) | C13—C15—H15B | 110.00 |
| C9—C10—C11 | 111.7 (6) | C13—C15—H15C | 109.00 |
| O2—C11—C10 | 121.4 (7) | H15A—C15—H15B | 109.00 |
| O2—C11—C12 | 123.1 (7) | H15A—C15—H15C | 109.00 |
| C10—C11—C12 | 115.5 (6) | H15B—C15—H15C | 110.00 |
| C11—C12—C13 | 115.0 (6) | C5—C16—H16A | 109.00 |
| C8—C13—C12 | 108.5 (6) | C5—C16—H16B | 110.00 |
| C8—C13—C14 | 109.7 (6) | C5—C16—H16C | 110.00 |
| C8—C13—C15 | 114.4 (6) | H16A—C16—H16B | 109.00 |
| C12—C13—C14 | 107.0 (5) | H16A—C16—H16C | 109.00 |
| C12—C13—C15 | 109.4 (6) | H16B—C16—H16C | 110.00 |
| C14—C13—C15 | 107.7 (6) | C1—C17—H17 | 116.00 |
| C1—C17—C18 | 128.3 (7) | C18—C17—H17 | 116.00 |
| C1—C2—H2A | 109.00 | C17—C18—H18A | 120.00 |
| C1—C2—H2B | 109.00 | C17—C18—H18B | 120.00 |
| C3—C2—H2A | 109.00 | H18A—C18—H18B | 120.00 |
| C3—C2—H2B | 109.00 | C1—C19—H19A | 109.00 |
| H2A—C2—H2B | 108.00 | C1—C19—H19B | 109.00 |
| C2—C3—H3A | 110.00 | C1—C19—H19C | 109.00 |
| C2—C3—H3B | 110.00 | H19A—C19—H19B | 109.00 |
| C4—C3—H3A | 110.00 | H19A—C19—H19C | 110.00 |
| C4—C3—H3B | 110.00 | H19B—C19—H19C | 109.00 |
| H3A—C3—H3B | 108.00 | C9—C20—H20A | 109.00 |
| C3—C4—H4 | 104.00 | C9—C20—H20B | 109.00 |
| C5—C4—H4 | 104.00 | C9—C20—H20C | 109.00 |
| C9—C4—H4 | 105.00 | H20A—C20—H20B | 110.00 |
| C5—C6—H6A | 109.00 | H20A—C20—H20C | 109.00 |
| C5—C6—H6B | 109.00 | H20B—C20—H20C | 109.00 |
| C5—O1—C1—C2 | 50.8 (7) | C4—C5—C6—C7 | 53.8 (7) |
| C5—O1—C1—C17 | −76.5 (6) | C16—C5—C6—C7 | −74.3 (6) |
| C5—O1—C1—C19 | 168.8 (5) | C5—C6—C7—C8 | −56.6 (7) |
| C1—O1—C5—C6 | −171.1 (5) | C6—C7—C8—C9 | 57.8 (7) |
| C1—O1—C5—C16 | 71.5 (6) | C6—C7—C8—C13 | −167.1 (5) |
| C1—O1—C5—C4 | −55.5 (6) | C7—C8—C9—C4 | −55.5 (6) |
| C19—C1—C2—C3 | −162.4 (5) | C7—C8—C9—C10 | −171.7 (5) |
| C2—C1—C17—C18 | 17.1 (10) | C7—C8—C9—C20 | 69.6 (6) |
| C19—C1—C17—C18 | −105.4 (8) | C13—C8—C9—C4 | 171.1 (5) |
| O1—C1—C17—C18 | 142.0 (7) | C13—C8—C9—C10 | 54.9 (7) |
| O1—C1—C2—C3 | −48.8 (6) | C13—C8—C9—C20 | −63.8 (7) |
| C17—C1—C2—C3 | 76.9 (7) | C7—C8—C13—C12 | 177.6 (5) |
| C1—C2—C3—C4 | 55.0 (7) | C7—C8—C13—C14 | 61.0 (7) |
| C2—C3—C4—C9 | 167.5 (5) | C7—C8—C13—C15 | −60.1 (7) |
| C2—C3—C4—C5 | −58.7 (6) | C9—C8—C13—C12 | −49.9 (7) |
| C3—C4—C5—C6 | 169.8 (5) | C9—C8—C13—C14 | −166.4 (6) |
| C9—C4—C5—C6 | −55.9 (6) | C9—C8—C13—C15 | 72.5 (8) |
| C3—C4—C5—C16 | −65.7 (7) | C4—C9—C10—C11 | −168.9 (5) |
| C9—C4—C5—O1 | −168.4 (4) | C8—C9—C10—C11 | −54.1 (7) |
| C3—C4—C5—O1 | 57.3 (6) | C20—C9—C10—C11 | 69.9 (7) |
| C3—C4—C9—C20 | 60.6 (7) | C9—C10—C11—O2 | −127.6 (8) |
| C5—C4—C9—C8 | 56.3 (6) | C9—C10—C11—C12 | 54.9 (8) |
| C5—C4—C9—C10 | 171.6 (5) | O2—C11—C12—C13 | 132.0 (8) |
| C5—C4—C9—C20 | −70.7 (6) | C10—C11—C12—C13 | −50.5 (9) |
| C9—C4—C5—C16 | 68.6 (6) | C11—C12—C13—C8 | 45.0 (8) |
| C3—C4—C9—C8 | −172.5 (5) | C11—C12—C13—C14 | 163.2 (6) |
| C3—C4—C9—C10 | −57.2 (6) | C11—C12—C13—C15 | −80.4 (8) |
| O1—C5—C6—C7 | 168.9 (5) |
| H··· | ||||
| C18—H18 | 0.93 | 2.59 | 3.501 (9) | 167 |