| Literature DB >> 29850090 |
Charlie L Hall1, Jason Potticary1, Hazel A Sparkes1, Natalie E Pridmore1, Simon R Hall1.
Abstract
Entities:
Keywords: crystal structure; ethanolate; lamotrigine
Year: 2018 PMID: 29850090 PMCID: PMC5947486 DOI: 10.1107/S2056989018005819
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A displacement ellipsoid plot of (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.
Chosen parameters for the comparison of lamotrigine alcohol solvates
| Structure | Central dihedral angle (°) | Dimerization motif | Density (g cm−1) |
|---|---|---|---|
| Methanol disolvate | 63.7 (2) |
| 1.50 |
| Ethanol monohydrate | 67.6 (0) |
| 1.49 |
| Methanol monosolvate | 80.1 (5) |
| 1.45 |
| Ethanol solvate (I) | 63.5 (9) |
| 1.42 |
| 2-Propanol solvate | 69.6 (8) |
| 1.36 |
| Butan-1-ol solvate monohydrate | 71.2 (1) |
| 1.34 |
Figure 2The crystal packing of (I), viewed along the c axis.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.84 | 2.01 | 2.848 (7) | 179 |
| N4—H4 | 0.88 | 2.10 | 2.972 (7) | 172 |
| N4—H4 | 0.88 | 2.14 | 2.841 (7) | 137 |
| N5—H5 | 0.88 | 2.16 | 3.014 (7) | 163 |
| N5—H5 | 0.88 | 2.14 | 2.987 (8) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3The bonding motif of adjacent lamotrigine dimers. The angle between the dimers was calculated using the planes of the indicated triazine rings.
Figure 4(a) The dimerization motif in (I), held together with the amines in the ortho position of the triazine group. The amine in the ortho and para positions are labelled with O and P, respectively. (b) The dimerization motif in the ethanolate hydrate structure, held together with the amines in the para position of the triazine group.
Experimental details
| Crystal data | |
| Chemical formula | C9H7Cl2N5·C2H6O |
|
| 302.16 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 21.2458 (15), 10.2320 (8), 14.8428 (11) |
| β (°) | 118.808 (4) |
|
| 2827.3 (4) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.46 |
| Crystal size (mm) | 0.39 × 0.25 × 0.13 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.602, 0.745 |
| No. of measured, independent and observed [ | 21376, 2925, 2634 |
|
| 0.053 |
| (sin θ/λ)max (Å−1) | 0.629 |
| Refinement | |
|
| 0.098, 0.234, 1.41 |
| No. of reflections | 2925 |
| No. of parameters | 193 |
| No. of restraints | 48 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.62, −0.87 |
Computer programs: APEX2 and SAINT (Bruker, 2015 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸) and Olex2 (Dolomanov et al., 2009 ▸).
| C9H7Cl2N5·C2H6O | |
| Monoclinic, | Mo |
| Cell parameters from 7221 reflections | |
| θ = 2.2–26.4° | |
| µ = 0.46 mm−1 | |
| β = 118.808 (4)° | |
| Block, colourless | |
| 0.39 × 0.25 × 0.13 mm |
| Bruker APEXII CCD diffractometer | 2925 independent reflections |
| Radiation source: fine-focus sealed tube | 2634 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.6°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2015) | |
| 21376 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2925 reflections | Δρmax = 0.62 e Å−3 |
| 193 parameters | Δρmin = −0.87 e Å−3 |
| 48 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. The occupancies of the disordered atoms in the ethanol were refined with their sum set to equal 1. Restraints were applied to maintain sensible thermal and geometric parameters. The diffraction data showed slight splitting of some peaks but twinning could not be sensibly separated and modelled. However this may explain the large K values, slightly high second weight paramater and Fobs greater than Fcalc. |
| Occ. (<1) | |||||
| Cl1 | 0.16117 (9) | 0.41684 (18) | 0.10486 (12) | 0.0254 (4) | |
| Cl2 | 0.06655 (8) | 0.37527 (18) | 0.21033 (13) | 0.0256 (4) | |
| O1 | 0.4106 (2) | 0.2925 (5) | 0.4111 (3) | 0.0192 (10) | |
| H1A | 0.397808 | 0.357810 | 0.371958 | 0.029* | 0.484 (14) |
| H1B | 0.398027 | 0.358121 | 0.372284 | 0.029* | 0.516 (14) |
| N3 | 0.3251 (3) | 0.6534 (5) | 0.1015 (4) | 0.0136 (10) | |
| N4 | 0.2195 (3) | 0.7095 (5) | 0.0967 (4) | 0.0145 (11) | |
| H4A | 0.208617 | 0.757236 | 0.041803 | 0.017* | |
| H4B | 0.189512 | 0.705023 | 0.121767 | 0.017* | |
| N1 | 0.3666 (3) | 0.5147 (6) | 0.2792 (4) | 0.0177 (11) | |
| N2 | 0.4130 (3) | 0.5288 (6) | 0.2425 (4) | 0.0185 (12) | |
| N5 | 0.4347 (3) | 0.6032 (7) | 0.1152 (4) | 0.0293 (15) | |
| H5A | 0.422053 | 0.646160 | 0.057650 | 0.035* | |
| H5B | 0.477226 | 0.565850 | 0.147585 | 0.035* | |
| C6 | 0.2549 (3) | 0.5427 (6) | 0.2790 (4) | 0.0144 (12) | |
| C8 | 0.2808 (3) | 0.6445 (6) | 0.1415 (4) | 0.0133 (12) | |
| C7 | 0.3022 (3) | 0.5648 (6) | 0.2321 (4) | 0.0142 (12) | |
| C4 | 0.2351 (4) | 0.5649 (7) | 0.4253 (5) | 0.0191 (13) | |
| H4 | 0.251372 | 0.593442 | 0.493888 | 0.023* | |
| C3 | 0.1697 (3) | 0.5029 (7) | 0.3727 (5) | 0.0193 (14) | |
| H3 | 0.140279 | 0.491009 | 0.404086 | 0.023* | |
| C2 | 0.1470 (3) | 0.4581 (7) | 0.2738 (5) | 0.0176 (13) | |
| C9 | 0.3894 (3) | 0.5948 (7) | 0.1536 (5) | 0.0189 (13) | |
| C5 | 0.2772 (3) | 0.5859 (7) | 0.3788 (5) | 0.0188 (13) | |
| H5 | 0.321851 | 0.630185 | 0.415469 | 0.023* | |
| C1 | 0.1893 (3) | 0.4782 (6) | 0.2273 (5) | 0.0152 (12) | |
| C10B | 0.4570 (8) | 0.2138 (16) | 0.3909 (13) | 0.024 (3) | 0.484 (14) |
| H10A | 0.435281 | 0.197369 | 0.316042 | 0.029* | 0.484 (14) |
| H10B | 0.464411 | 0.128524 | 0.426119 | 0.029* | 0.484 (14) |
| C11B | 0.5275 (8) | 0.2819 (16) | 0.4283 (14) | 0.030 (4) | 0.484 (14) |
| H11A | 0.519935 | 0.365998 | 0.393000 | 0.045* | 0.484 (14) |
| H11B | 0.559689 | 0.227634 | 0.414026 | 0.045* | 0.484 (14) |
| H11C | 0.549146 | 0.296685 | 0.502588 | 0.045* | 0.484 (14) |
| C10A | 0.4866 (8) | 0.2617 (17) | 0.4439 (12) | 0.030 (3) | 0.516 (14) |
| H10C | 0.500914 | 0.183860 | 0.489087 | 0.036* | 0.516 (14) |
| H10D | 0.516983 | 0.335764 | 0.484496 | 0.036* | 0.516 (14) |
| C11A | 0.5000 (8) | 0.2356 (15) | 0.3545 (12) | 0.030 (3) | 0.516 (14) |
| H11D | 0.466604 | 0.168389 | 0.310075 | 0.045* | 0.516 (14) |
| H11E | 0.549503 | 0.205101 | 0.380438 | 0.045* | 0.516 (14) |
| H11F | 0.492715 | 0.316205 | 0.315082 | 0.045* | 0.516 (14) |
| Cl1 | 0.0342 (9) | 0.0289 (9) | 0.0201 (8) | −0.0150 (7) | 0.0189 (7) | −0.0098 (7) |
| Cl2 | 0.0144 (7) | 0.0370 (10) | 0.0260 (8) | −0.0077 (7) | 0.0102 (6) | 0.0040 (7) |
| O1 | 0.017 (2) | 0.024 (2) | 0.020 (2) | 0.0066 (18) | 0.0105 (18) | 0.0100 (19) |
| N3 | 0.010 (2) | 0.018 (3) | 0.011 (2) | 0.003 (2) | 0.004 (2) | 0.004 (2) |
| N4 | 0.011 (2) | 0.020 (3) | 0.012 (2) | 0.005 (2) | 0.006 (2) | 0.007 (2) |
| N1 | 0.016 (3) | 0.023 (3) | 0.016 (3) | 0.001 (2) | 0.010 (2) | 0.003 (2) |
| N2 | 0.010 (2) | 0.031 (3) | 0.015 (3) | 0.006 (2) | 0.007 (2) | 0.008 (2) |
| N5 | 0.017 (3) | 0.056 (4) | 0.019 (3) | 0.017 (3) | 0.012 (2) | 0.018 (3) |
| C6 | 0.015 (3) | 0.016 (3) | 0.013 (3) | 0.005 (2) | 0.008 (2) | 0.004 (2) |
| C8 | 0.014 (3) | 0.015 (3) | 0.012 (3) | 0.000 (2) | 0.007 (2) | −0.001 (2) |
| C7 | 0.009 (3) | 0.019 (3) | 0.014 (3) | 0.000 (2) | 0.006 (2) | 0.000 (2) |
| C4 | 0.025 (3) | 0.020 (3) | 0.013 (3) | 0.003 (3) | 0.010 (3) | 0.003 (3) |
| C3 | 0.021 (3) | 0.022 (3) | 0.023 (3) | 0.009 (3) | 0.018 (3) | 0.009 (3) |
| C2 | 0.014 (3) | 0.021 (3) | 0.019 (3) | −0.001 (3) | 0.009 (3) | 0.002 (3) |
| C9 | 0.015 (3) | 0.027 (4) | 0.017 (3) | 0.008 (3) | 0.010 (2) | 0.008 (3) |
| C5 | 0.015 (3) | 0.024 (3) | 0.015 (3) | 0.002 (3) | 0.006 (2) | 0.004 (3) |
| C1 | 0.019 (3) | 0.015 (3) | 0.012 (3) | 0.003 (2) | 0.009 (2) | 0.002 (2) |
| C10B | 0.020 (5) | 0.026 (5) | 0.028 (5) | 0.006 (5) | 0.013 (4) | 0.005 (5) |
| C11B | 0.020 (7) | 0.028 (7) | 0.044 (8) | 0.008 (6) | 0.017 (6) | 0.015 (6) |
| C10A | 0.017 (5) | 0.039 (6) | 0.031 (5) | 0.007 (5) | 0.011 (4) | 0.013 (5) |
| C11A | 0.030 (6) | 0.027 (7) | 0.040 (7) | 0.009 (6) | 0.021 (6) | 0.008 (6) |
| Cl1—C1 | 1.735 (6) | C8—C7 | 1.446 (8) |
| Cl2—C2 | 1.725 (6) | C4—H4 | 0.9500 |
| O1—H1A | 0.8400 | C4—C3 | 1.377 (9) |
| O1—H1B | 0.8400 | C4—C5 | 1.386 (9) |
| O1—C10B | 1.413 (15) | C3—H3 | 0.9500 |
| O1—C10A | 1.477 (14) | C3—C2 | 1.384 (9) |
| N3—C8 | 1.335 (7) | C2—C1 | 1.387 (8) |
| N3—C9 | 1.344 (8) | C5—H5 | 0.9500 |
| N4—H4A | 0.8800 | C10B—H10A | 0.9900 |
| N4—H4B | 0.8800 | C10B—H10B | 0.9900 |
| N4—C8 | 1.322 (8) | C10B—C11B | 1.50 (2) |
| N1—N2 | 1.345 (7) | C11B—H11A | 0.9800 |
| N1—C7 | 1.304 (8) | C11B—H11B | 0.9800 |
| N2—C9 | 1.346 (8) | C11B—H11C | 0.9800 |
| N5—H5A | 0.8800 | C10A—H10C | 0.9900 |
| N5—H5B | 0.8800 | C10A—H10D | 0.9900 |
| N5—C9 | 1.336 (8) | C10A—C11A | 1.51 (2) |
| C6—C7 | 1.490 (8) | C11A—H11D | 0.9800 |
| C6—C5 | 1.392 (9) | C11A—H11E | 0.9800 |
| C6—C1 | 1.391 (9) | C11A—H11F | 0.9800 |
| C10B—O1—H1A | 109.5 | N5—C9—N2 | 116.5 (6) |
| C10A—O1—H1B | 109.5 | C6—C5—H5 | 119.7 |
| C8—N3—C9 | 116.9 (5) | C4—C5—C6 | 120.6 (6) |
| H4A—N4—H4B | 120.0 | C4—C5—H5 | 119.7 |
| C8—N4—H4A | 120.0 | C6—C1—Cl1 | 119.8 (5) |
| C8—N4—H4B | 120.0 | C2—C1—Cl1 | 119.2 (5) |
| C7—N1—N2 | 121.7 (5) | C2—C1—C6 | 120.9 (6) |
| N1—N2—C9 | 116.9 (5) | O1—C10B—H10A | 109.8 |
| H5A—N5—H5B | 120.0 | O1—C10B—H10B | 109.8 |
| C9—N5—H5A | 120.0 | O1—C10B—C11B | 109.3 (13) |
| C9—N5—H5B | 120.0 | H10A—C10B—H10B | 108.3 |
| C5—C6—C7 | 119.2 (6) | C11B—C10B—H10A | 109.8 |
| C1—C6—C7 | 122.4 (5) | C11B—C10B—H10B | 109.8 |
| C1—C6—C5 | 118.3 (6) | C10B—C11B—H11A | 109.5 |
| N3—C8—C7 | 118.6 (5) | C10B—C11B—H11B | 109.5 |
| N4—C8—N3 | 118.5 (5) | C10B—C11B—H11C | 109.5 |
| N4—C8—C7 | 122.9 (5) | H11A—C11B—H11B | 109.5 |
| N1—C7—C6 | 117.3 (5) | H11A—C11B—H11C | 109.5 |
| N1—C7—C8 | 119.9 (5) | H11B—C11B—H11C | 109.5 |
| C8—C7—C6 | 122.7 (5) | O1—C10A—H10C | 109.0 |
| C3—C4—H4 | 119.8 | O1—C10A—H10D | 109.0 |
| C3—C4—C5 | 120.5 (6) | O1—C10A—C11A | 112.8 (12) |
| C5—C4—H4 | 119.8 | H10C—C10A—H10D | 107.8 |
| C4—C3—H3 | 120.2 | C11A—C10A—H10C | 109.0 |
| C4—C3—C2 | 119.6 (6) | C11A—C10A—H10D | 109.0 |
| C2—C3—H3 | 120.2 | C10A—C11A—H11D | 109.5 |
| C3—C2—Cl2 | 119.3 (5) | C10A—C11A—H11E | 109.5 |
| C3—C2—C1 | 120.0 (6) | C10A—C11A—H11F | 109.5 |
| C1—C2—Cl2 | 120.7 (5) | H11D—C11A—H11E | 109.5 |
| N3—C9—N2 | 125.6 (5) | H11D—C11A—H11F | 109.5 |
| N5—C9—N3 | 117.9 (6) | H11E—C11A—H11F | 109.5 |
| H··· | ||||
| O1—H1 | 0.84 | 2.01 | 2.848 (7) | 179 |
| N4—H4 | 0.88 | 2.10 | 2.972 (7) | 172 |
| N4—H4 | 0.88 | 2.14 | 2.841 (7) | 137 |
| N5—H5 | 0.88 | 2.16 | 3.014 (7) | 163 |
| N5—H5 | 0.88 | 2.14 | 2.987 (8) | 161 |