Literature DB >> 29850056

Crystal structures of eight- and ten-membered cyclic bis-anisyl-phosphono-thioyl disulfanes and comparison with their P-ferrocenyl analogues.

Witold Przychodzeń1, Jarosław Chojnacki2.   

Abstract

Two new crystal structures of eight- and ten-membered cyclic bis-anisyl-phosphono-thioyl disulfanes, namely 2,5-bis-(4-meth-oxy-phen-yl)-1,6,3,4,2λ5,5λ5-dioxadi-thiadi-phospho-cane-2,5-di-thione, C16H18O4P2S4, and 2,5-bis-(4-meth-oxy-phen-yl)-1,6,3,4,2λ5,5λ5-dioxadi-thia-diphosphecane-2,5-di-thione, C18H22O4P2S4, have been determined and compared to structures of the ferrocenyl analogues. The eight-membered rings have similar conformations (TBC) but the ten-membered macrocycles are differently puckered. Structural parameters of the relevant SPSSPS motif have been analysed and are discussed in detail. Compound 1 was refined as an inversion twin and 2 was refined as a two-component rotational twin.

Entities:  

Keywords:  C—H⋯S=P inter­actions; bis­phosphono­thioyl disulfanes; crystal structure; medium-sized heterocycles

Year:  2018        PMID: 29850056      PMCID: PMC5956339          DOI: 10.1107/S2056989018001068

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The most widely used sulfur-transfer agents for thio­nation of carbonyl compounds are the four-membered 2,4-dianisyl-1,3-di­thia­diphosphetane di­sulfide dimer [AnP(μ-S)S]2 and the 2,4-diferrocenyl-1,3-di­thia­diphosphetane di­sulfide dimer [FcP(μ-S)S]2, i.e. Lawesson reagent LR (Jesberger et al., 2003 ▸) and ferrocenyl Lawesson reagent fLR (Foreman et al., 1996 ▸). However, thio­phosphine oxides (AnPSO or FcPSO) separating as cyclic trimers during thio­nation reactions are usually unwanted side-products. On the other hand, the corresponding alk­oxy­phosphinodi­thioic acids, i.e. An(RO)P(S)SH and Fc(RO)P(S)SH, obtained in a simple reaction between LR or fLR and alcohols, are of considerable inter­est because they form a plethora of structurally inter­esting chelate complexes with metal ions (van Zyl & Woollins, 2013 ▸). The reactions between Lawesson’s reagent and diols/diphenols have been successfully involved in the preparation of bis­(anisyl­phosphono­dithioic) acid derivatives and among them the unique eight-, nine- and ten-membered cyclic bis­anisyl­phosphono­thioyl disulfanes (Przychodzeń, 2004 ▸). A high-yielding formation of these medium-sized cyclic disulf­anes upon oxidation of bis­(anisyl­phosphono­dithtioic) acid salts by iodine proceeding without oligomeric by-products may be attributed to their fixed structure, containing the most preferred a zigzag motif of the SPSSPS unit. Slightly modified procedures with respect to the original method have recently been applied for the synthesis of related cyclic bis­(ferro­cenyl­phosphono­thio­yl)disulfanes, e.g. eight-membered 1 (Pillay et al., 2015 ▸) and ten-membered 2 (Hua et al., 2017 ▸) and their crystal structures have been determined. Here we report crystal structures compounds 1 and 2, containing anisyl groups instead of the ferrocenyl moiety.

Structural commentary

Views of mol­ecular structures and atom-labeling scheme for 1 and 2 are given in Figs. 1 ▸ and 2 ▸, respectively. Compound 1 crystallizes in the P43212 space group with a half-mol­ecule in the asymmetric unit. It follows that the mol­ecule obeys point group symmetry described by Schoenflies symbol C 2 (or symbol 2 in inter­national notation). The related ferrocenyl compound 1 crystallizes in space group C2/c with non-typical three and half independent mol­ecules in the asymmetric unit (Z = 28), which complicates comparisons.
Figure 1

The mol­ecular structure of 1, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. Symmetry-equivalent atoms are generated by the operation (y + 1, x − 1, −z).

Figure 2

View of the asymmetric unit of 2, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Compound 2 forms a monoclinic crystalline phase obeying P21/c space-group symmetry with one mol­ecule in the asymmetric unit and Z = 4. The related ferrocenyl structure 2 crystallizes in space group P with one mol­ecule in the asymmetric unit. The anisyl groups as well as the ferrocenyl groups on the two phospho­rus atoms are positioned in a trans arrangement, i.e. above and below the macrocycle ring plane for all compounds 1–2 , which is also typical for all open-chain bis­phospho­rothioyl disulfanes studied previously (Gray et al., 2004 ▸). The S—S bond lengths have values of 2.068 (2) Å for 1; 2.0697 (10), 2.0704 (10), 2.0685 (10), 2.0711 (15) Å for 1 ; 2.074 (3) Å for 2 and 2.0788 (9) Å for 2 . They are longer than the typical S—S bond lengths for known diorganyl disulfanes RSSR [2.05 (3) Å]. The observed S—S bond elongation in 1–2 may be correlated with the PSSP torsion angles (Knopik et al., 1993 ▸). As expected, exocyclic P=S bond lengths (ca 1.92 Å) are shorter than the endocyclic P—S bonds (ca 2.10 Å). All phospho­rus atoms in 1–2 adopt a distorted tetra­hedral geometry, where the C—P=S angles deviated the most (116.1–118.5°) from the ideal tetra­hedral angle. This is obviously due to the steric effects of the anisyl and ferrocenyl substituents. On the other hand, it is worthy to note that the O—P–S bond angles in 1–2 (107–108°) are not distorted, probably due to minimal conformational strain present in those medium-sized heterocycles. Moreover, both the P=S and aromatic anisyl groups in 1 are almost perfectly coplanar (unlike P=S and the cyclopentadienyl ring in 1 ), which provides energetically favorable conjugation [torsion angle S2—P1—C10C15 = −3.8 (4)° in 1 vs 35.75 (3)° for the equivalent angle in a selected representative mol­ecule with Fe7 in 1 ]. The other related independent torsion angles in 1 are −31. (3), −33.9 (3), −27.0 (3), −28.7 (3), 34.8 (3), 35.7 (3)°, for Fe1–Fe6, respectively. It is well recognised that PSSP torsion is a characteristic feature of all disulfanes as a class of organic compounds. The structure of 1 is the most symmetric with the lowest PSSP torsion [−93.68 (8)°] and shows only a moderate deviation from a right angle. The PSSP torsion angles in 1 [−101.19 (4), −100.06 (4), −101.47 (4) and 99.89 (4)°] are 6–8° wider than in 1. Notably, ten-membered disulfanes have even wider PSSP torsion angles and the difference between them is smaller, −112.89 (11) and 114.9 (4)°, for 2 and 2 , respectively. Only non-classical hydrogen-bonding inter­actions of the type C—H⋯X (X = O or S) can be found in the structures of 1 and 2 (Tables 1 ▸ and 2 ▸).
Table 1

Hydrogen-bond geometry (Å, °) for 1

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1A⋯O2i 0.972.603.4843 (2)151
C14—H14⋯O1ii 0.932.553.4548 (2)163

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °) for 2

Cg is the centroid of the C20–C25 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1B⋯S30.992.813.3883 (2)118
C4—H4B⋯O10.992.483.1308 (2)123
C4—H4B⋯O4i 0.992.563.2708 (2)128
C11—H11⋯O4i 0.952.623.4951 (3)154
C24—H24⋯O3ii 0.952.513.4240 (3)162
C16—H16ACg iii 0.982.623.454 (8)143

Symmetry codes: (i) ; (ii) ; (iii) .

The transannular P⋯P distances are very similar within the same ring size and increase, from 4.3331 (17) Å in 1 and 4.2625 (9), 4.2670 (9), 4.2652 (9) or 4.261 (1) Å (for different independent mol­ecules in 1 ) for eight-membered rings, to 4.614 (2) in 2 and 4.604 (1) Å in 2 for the ten-membered rings. The conformation of the eight-membered macrocycles in 1 and 1 was recognised by PLATON (Spek, 2009 ▸) as being closest to the TBC form (twist–boat chair; Evans & Boeyens, 1989 ▸; Wiberg, 2003 ▸), which is consistent with C 2 point symmetry. Fig. 3 ▸ shows the overlay of the two structures based on the best fit of the PSSP fragment. The conformation of 2 was not assigned to any border type by PLATON, but Fig. 4 ▸ shows the puckering in 2 and 2 is distinctively different.
Figure 3

Superimposition of eight-membered di­phospho­canes 1 (blue) and 1 (grey) based on the best PSSP fragment fit.

Figure 4

Overlay of ten-membered diphosphecanes 2 (blue) and 2 (grey) based on the best PSSP fragment fit.

It is probably important to note that the intra­molecular C4—H4B⋯O1 hydrogen bond (Table 2 ▸) stabilizes the ten-membered ring of 2.

Supra­molecular features

The strongest inter­molecular hydrogen-bonding inter­action in 1 is between the anisyl ortho-hydrogen and macrocyclic O1 atoms and links the mol­ecules into a diamondoid network. There are no ring-stacking inter­actions since the shortest centroid–centroid distance is 5.0965 (3) Å. The anisyl substituents may have inhibited this kind of inter­action. Inter­molecular inter­actions in 2 are mainly based on the anisyl methoxyl CH3O oxygen atoms O3 and O4 and the P=S sulfur atom S3 as acceptors. Hydrogen-bond donors are the anisyl ortho-hydrogen atoms or methyl­ene hydrogen atoms. Moreover, some C—H..π. inter­actions may play some role in the system, e.g. C16—H16A⋯ring(C20–C25), see Fig. 5 ▸. Again, the stacking inter­actions are weak since the closest inter­centroid distance is equal to 4.9213 (4) Å.
Figure 5

C—H⋯π inter­action and inter­nal C—H⋯O hydrogen bonding in the ten-membered ring of 2.

Database survey

Bisphosphono­thioyl disulfanes represent a rather rare class of compounds (CSD Version 5.28, updated to Nov. 2016; Groom et al., 2016 ▸). Only three structures of cyclic bis­phosphono­thioyl disulfanes can be found in the database, HUGXAK, HUXEO and HUGXIS (ferrocenyl derivatives; Pillay et al., 2015 ▸) and four more will be available there soon (Hua et al., 2017 ▸). For structures of acyclic bis­phosphono­thioyl disulfanes see: FATTEA, FATTIE, FATVEC (Gray et al., 2004 ▸), YESDIY (Łopusiński et al., 1991 ▸), SIZHUF (Przychodzeń & Chojnacki, 2008 ▸) and WAYMEO (Knopik et al., 1993 ▸).

Synthesis and crystallization

Eight- and ten-membered cyclic bis­anisyl­phosphono­thioyl disulfanes 1 and 2 were prepared using previously reported procedure (Przychodzeń, 2004 ▸). Compound 1 was fully spectroscopically characterized in that paper. Disulfane 2 is quite new, so all available spectroscopic data are given below. Both 1 and 2 gave good quality colourless crystals after crystallization from ethyl acetate–cyclo­hexane (1:2 v/v) solvent system. 2,5-Bis(4-meth­oxy­phen­yl)-1,6,3,4,2,5-dioxadi­thiadi­phos­pho­cane 2,5-di­thione, 1 M.p. 441-443 K. 2,5-Bis(4-meth­oxy­phen­yl)-1,6,3,4,2,5-dioxadi­thia­diphos­phecane 2,5-di­thione, 2 Yield: 65%, m.p. 415–417 K. 1H NMR (CDCl3): 2.20 (m, 2H, OCH2CH), 2.25 (m, 2H, OCH2CH), 3.89 (s, 6H, OCH), 4.37 (dddd, 3 J HH = 11.6 Hz, 2 J HH = 10.4 Hz, 3 J HP = 5.4 Hz, 3 J HH = 2.2 Hz, 2H, OCHHB), 4.89 (ddt, 2 J HH = 10.4 Hz, 3 J HP = 9.3 Hz, 3 J HH = 3.5 Hz, 2H, OCHA H), 7.01 (dd, 3 J HH = 8.8 Hz, 4 J HP = 3.9 Hz, 4H, Hmeta), 7.87 (dd, 3 J HP = 14.2 Hz, 3 J HH = 8.8 Hz, 4H, Hortho). 13C NMR: 27.21 (d, J = 6.9 Hz), 55.46 (s), 67.08 (d, J = 6.3 Hz), 114.03 (d, J = 17.5 Hz), 125.41 (d, J = 134 Hz), 132.89 (d, J = 14.5 Hz), 163.09 (s). 31P{1H} NMR (CDCl3): 89.19 (3 J PP = 4 Hz) MS calculated for C18H22O4P2S4: 492.0. Found: 492.9 [M+H]+.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Structure 1 was refined as an inversion twin with contribution of the second domain equal to 0.45 (17). This explains the ambiguous Flack parameter and is not surprising since we started from achiral substrates. Structure 2 was refined as a two-component rotational twin with twin law: { 0 0, 0 0, 0 0 1} and BASF = 0.767 (3). Relatively high residual electron-density peaks in 2 (Q1–Q3 ca 2e Å3), which are close to sulfur atoms (0.58 Å from S4, 0.49 Å from S2, 0.49 Å from S1), may stem from conformational flexibility of the ring. Note: the structure of 1 was determined at room temperature (due to a failure of our CryoStream unit) not at 120 K as for 2 but we believe it did not influence the qualitative conclusions drawn from the results.
Table 3

Experimental details

  1 2
Crystal data
Chemical formulaC16H18O4P2S4 C18H22O4P2S4
M r 464.48492.53
Crystal system, space groupTetragonal, P43212Monoclinic, P21/c
Temperature (K)296120
a, b, c (Å)7.2415 (3), 7.2415 (3), 39.516 (2)9.4262 (6), 13.3761 (8), 17.7998 (13)
α, β, γ (°)90, 90, 9090, 90.068 (7), 90
V3)2072.2 (2)2244.3 (3)
Z 44
Radiation typeMo KαMo Kα
μ (mm−1)0.630.59
Crystal size (mm)0.44 × 0.42 × 0.030.21 × 0.20 × 0.14
 
Data collection
DiffractometerOxford Diffraction KM-4 CCDOxford Diffraction KM-4 CCD
Absorption correctionMulti-scan (CrysAlis PRO; Agilent, 2011)Analytical [CrysAlis PRO (Agilent, 2011) based on expressions derived by Clark & Reid (1995)]
T min, T max 0.689, 0.980.893, 0.929
No. of measured, independent and observed [I > 2σ(I)] reflections14211, 2019, 18399496, 4047, 3309
R int 0.0360.051
(sin θ/λ)max−1)0.6170.606
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.038, 0.092, 1.090.082, 0.241, 1.05
No. of reflections20194047
No. of parameters120256
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.33, −0.222.27, −0.84
Absolute structureRefined as an inversion twin
Absolute structure parameter0.45 (17)

Computer programs: CrysAlis PRO (Agilent, 2011 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2008 ▸), WinGX (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) 2, global, 1. DOI: 10.1107/S2056989018001068/zp2026sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989018001068/zp20261sup2.hkl Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989018001068/zp20262sup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018001068/zp20261sup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018001068/zp20262sup5.cml CCDC references: 1558043, 719124 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H18O4P2S4Dx = 1.489 Mg m3
Mr = 464.48Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P43212Cell parameters from 6759 reflections
Hall symbol: P 4nw 2abwθ = 2.1–32.4°
a = 7.2415 (3) ŵ = 0.63 mm1
c = 39.516 (2) ÅT = 296 K
V = 2072.2 (2) Å3Plate, colourless
Z = 40.44 × 0.42 × 0.03 mm
F(000) = 960
Oxford Diffraction KM-4 CCD diffractometer1839 reflections with I > 2σ(I)
Detector resolution: 8.1883 pixels mm-1Rint = 0.036
ω scans, 0.40 deg widthθmax = 26.0°, θmin = 2.9°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −8→8
Tmin = 0.689, Tmax = 0.98k = −8→8
14211 measured reflectionsl = −48→38
2019 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0514P)2 + 0.5163P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2019 reflectionsΔρmax = 0.33 e Å3
120 parametersΔρmin = −0.22 e Å3
0 restraintsAbsolute structure: Refined as an inversion twin
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.45 (17)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
P10.93887 (12)0.21832 (13)0.04117 (2)0.0424 (2)
S10.84270 (13)0.04364 (17)0.00256 (2)0.0584 (3)
S20.79007 (17)0.43697 (17)0.03709 (3)0.0715 (4)
O11.1556 (3)0.2344 (3)0.03669 (5)0.0424 (6)
O20.8974 (4)−0.1523 (4)0.17469 (6)0.0552 (7)
C11.2424 (5)0.3553 (5)0.01202 (8)0.0450 (8)
H1A1.32090.44390.02350.054*
H1B1.14850.4228−0.00040.054*
C100.9277 (5)0.1007 (5)0.08087 (8)0.0412 (7)
C111.0238 (5)−0.0610 (6)0.08670 (9)0.0576 (10)
H111.0949−0.11130.06940.069*
C121.0170 (6)−0.1496 (6)0.11749 (9)0.0584 (10)
H121.082−0.25890.12070.07*
C130.9144 (5)−0.0768 (5)0.14352 (7)0.0434 (8)
C140.8206 (6)0.0864 (6)0.13813 (9)0.0555 (10)
H140.75290.13840.15570.067*
C150.8252 (6)0.1736 (5)0.10720 (9)0.0526 (9)
H150.7590.28230.1040.063*
C161.0028 (6)−0.3130 (6)0.18232 (11)0.0672 (12)
H16A0.9613−0.41380.16850.101*
H16B0.9871−0.34420.20580.101*
H16C1.1309−0.28940.17790.101*
U11U22U33U12U13U23
P10.0373 (4)0.0559 (5)0.0340 (4)0.0025 (4)0.0018 (3)0.0025 (4)
S10.0423 (5)0.0932 (8)0.0396 (5)−0.0164 (5)−0.0034 (4)−0.0029 (5)
S20.0711 (7)0.0755 (7)0.0678 (7)0.0285 (6)0.0106 (5)0.0156 (6)
O10.0403 (12)0.0552 (14)0.0318 (11)−0.0057 (11)−0.0003 (9)0.0010 (10)
O20.0598 (16)0.0694 (17)0.0363 (13)0.0070 (13)0.0086 (11)0.0069 (11)
C10.054 (2)0.0427 (18)0.0381 (17)−0.0144 (16)0.0004 (15)−0.0036 (14)
C100.0358 (16)0.054 (2)0.0336 (15)0.0004 (15)0.0034 (14)0.0006 (14)
C110.056 (2)0.076 (3)0.0400 (18)0.026 (2)0.0145 (16)0.0035 (18)
C120.062 (2)0.069 (2)0.0443 (19)0.0260 (19)0.0073 (17)0.0058 (17)
C130.0363 (18)0.061 (2)0.0329 (15)−0.0035 (15)0.0030 (13)0.0010 (15)
C140.066 (3)0.061 (2)0.0402 (18)0.0157 (19)0.0169 (16)−0.0040 (17)
C150.065 (3)0.050 (2)0.0424 (19)0.0145 (18)0.0131 (17)−0.0021 (16)
C160.073 (3)0.078 (3)0.051 (2)0.011 (2)0.0064 (19)0.016 (2)
P1—O11.584 (2)C10—C151.383 (5)
P1—C101.787 (3)C11—C121.376 (5)
P1—S21.9220 (14)C11—H110.93
P1—S12.1006 (13)C12—C131.374 (5)
S1—S1i2.068 (2)C12—H120.93
O1—C11.453 (4)C13—C141.380 (5)
O2—C131.353 (4)C14—C151.376 (5)
O2—C161.424 (5)C14—H140.93
C1—C1i1.496 (7)C15—H150.93
C1—H1A0.97C16—H16A0.96
C1—H1B0.97C16—H16B0.96
C10—C111.382 (5)C16—H16C0.96
O1—P1—C10100.26 (14)C10—C11—H11119.2
O1—P1—S2119.05 (11)C13—C12—C11120.2 (4)
C10—P1—S2116.15 (13)C13—C12—H12119.9
O1—P1—S1106.97 (9)C11—C12—H12119.9
C10—P1—S1109.61 (12)O2—C13—C12125.1 (3)
S2—P1—S1104.44 (6)O2—C13—C14116.2 (3)
S1i—S1—P1105.17 (6)C12—C13—C14118.6 (3)
C1—O1—P1123.2 (2)C15—C14—C13121.2 (3)
C13—O2—C16118.3 (3)C15—C14—H14119.4
O1—C1—C1i109.5 (3)C13—C14—H14119.4
O1—C1—H1A109.8C14—C15—C10120.4 (3)
C1i—C1—H1A109.8C14—C15—H15119.8
O1—C1—H1B109.8C10—C15—H15119.8
C1i—C1—H1B109.8O2—C16—H16A109.5
H1A—C1—H1B108.2O2—C16—H16B109.5
C11—C10—C15117.9 (3)H16A—C16—H16B109.5
C11—C10—P1121.8 (3)O2—C16—H16C109.5
C15—C10—P1120.2 (3)H16A—C16—H16C109.5
C12—C11—C10121.6 (3)H16B—C16—H16C109.5
C12—C11—H11119.2
C10—P1—O1—C1−165.8 (2)P1—C10—C11—C12179.0 (3)
S2—P1—O1—C1−38.0 (3)C10—C11—C12—C13−0.6 (7)
S1—P1—O1—C179.8 (2)C16—O2—C13—C124.4 (6)
P1—O1—C1—C1i−119.6 (3)C16—O2—C13—C14−175.3 (4)
O1—P1—C10—C11−52.2 (3)C11—C12—C13—O2179.8 (4)
S2—P1—C10—C11178.1 (3)C11—C12—C13—C14−0.5 (6)
S1—P1—C10—C1160.1 (3)O2—C13—C14—C15−178.8 (4)
O1—P1—C10—C15125.9 (3)C12—C13—C14—C151.5 (6)
S2—P1—C10—C15−3.8 (4)C13—C14—C15—C10−1.2 (7)
S1—P1—C10—C15−121.9 (3)C11—C10—C15—C140.1 (6)
C15—C10—C11—C120.9 (6)P1—C10—C15—C14−178.1 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2ii0.972.603.4843 (2)151
C14—H14···O1iii0.932.553.4548 (2)163
C18H22O4P2S4F(000) = 1024
Mr = 492.53Dx = 1.458 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5521 reflections
a = 9.4262 (6) Åθ = 1.9–28.8°
b = 13.3761 (8) ŵ = 0.59 mm1
c = 17.7998 (13) ÅT = 120 K
β = 90.068 (7)°Prism, colourless
V = 2244.3 (3) Å30.21 × 0.20 × 0.14 mm
Z = 4
Oxford Diffraction KM-4 CCD diffractometer4047 independent reflections
Graphite monochromator3309 reflections with I > 2σ(I)
Detector resolution: 8.19 pixels mm-1Rint = 0.051
ω scansθmax = 25.5°, θmin = 1.9°
Absorption correction: analytical [CrysAlis PRO (Agilent, 2011) based on expressions derived by Clark & Reid (1995)]h = −6→11
Tmin = 0.893, Tmax = 0.929k = −13→16
9496 measured reflectionsl = −21→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.082Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.241H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1828P)2 + 0.8642P] where P = (Fo2 + 2Fc2)/3
4047 reflections(Δ/σ)max < 0.001
256 parametersΔρmax = 2.27 e Å3
0 restraintsΔρmin = −0.84 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component twin.
xyzUiso*/Ueq
P10.34560 (19)0.44281 (13)0.17369 (10)0.0294 (4)
P20.74857 (19)0.25294 (12)0.13780 (10)0.0288 (4)
S10.40975 (19)0.31382 (12)0.11377 (10)0.0318 (4)
S20.5483 (2)0.24408 (12)0.18767 (10)0.0325 (4)
S30.1939 (2)0.49814 (14)0.11372 (11)0.0384 (5)
S40.8724 (2)0.19798 (14)0.21394 (12)0.0413 (5)
O10.4806 (6)0.5097 (3)0.1892 (3)0.0342 (11)
O20.7721 (6)0.3641 (3)0.1101 (3)0.0348 (11)
O30.2227 (5)0.2847 (4)0.4774 (3)0.0344 (11)
O40.7677 (6)0.0419 (4)−0.1545 (3)0.0377 (12)
C10.5242 (8)0.5920 (5)0.1389 (4)0.0356 (16)
H1A0.56180.64770.16960.043*
H1B0.43990.61690.11140.043*
C20.6350 (8)0.5604 (5)0.0833 (4)0.0357 (16)
H2A0.64290.6130.04440.043*
H2B0.60190.49870.05810.043*
C30.7811 (9)0.5412 (5)0.1152 (5)0.0392 (17)
H3A0.80830.59910.14670.047*
H3B0.84930.53760.0730.047*
C40.7962 (8)0.4456 (5)0.1626 (4)0.0335 (15)
H4A0.89230.4410.18490.04*
H4B0.72520.44430.20350.04*
C100.3054 (7)0.3994 (5)0.2668 (4)0.0303 (15)
C110.4091 (7)0.3973 (5)0.3230 (4)0.0288 (14)
H110.5010.42330.31320.035*
C120.3784 (7)0.3576 (5)0.3929 (4)0.0311 (15)
H120.44940.35490.43070.037*
C130.2422 (8)0.3216 (5)0.4072 (4)0.0302 (15)
C140.1390 (8)0.3237 (5)0.3512 (4)0.0343 (16)
H140.04650.29850.36070.041*
C150.1728 (8)0.3631 (5)0.2814 (4)0.0341 (15)
H150.10260.36490.24310.041*
C160.0843 (8)0.2559 (5)0.4988 (5)0.0377 (17)
H16A0.02020.31330.49420.057*
H16B0.08540.23270.55110.057*
H16C0.05130.20170.46610.057*
C200.7453 (7)0.1893 (5)0.0491 (4)0.0291 (14)
C210.7321 (8)0.2409 (5)−0.0182 (4)0.0302 (15)
H210.71730.3112−0.0180.036*
C220.7406 (8)0.1894 (5)−0.0860 (4)0.0320 (15)
H220.73330.2242−0.13230.038*
C230.7602 (7)0.0850 (5)−0.0852 (4)0.0302 (14)
C240.7703 (9)0.0347 (5)−0.0185 (4)0.0372 (17)
H240.7819−0.0359−0.01830.045*
C250.7636 (9)0.0867 (5)0.0488 (4)0.0368 (16)
H250.77160.05170.09510.044*
C260.7930 (13)−0.0639 (6)−0.1555 (5)0.058 (3)
H26A0.8789−0.0789−0.12660.087*
H26B0.8055−0.0863−0.20750.087*
H26C0.7119−0.0986−0.13310.087*
U11U22U33U12U13U23
P10.0321 (9)0.0271 (9)0.0289 (9)0.0023 (7)0.0031 (7)0.0019 (7)
P20.0358 (9)0.0216 (8)0.0292 (10)0.0003 (7)0.0061 (8)−0.0005 (6)
S10.0380 (9)0.0291 (8)0.0285 (9)−0.0009 (7)0.0034 (8)−0.0020 (7)
S20.0407 (9)0.0271 (8)0.0299 (9)0.0032 (7)0.0086 (8)0.0039 (7)
S30.0399 (9)0.0405 (10)0.0348 (10)0.0079 (7)0.0008 (8)0.0061 (8)
S40.0486 (11)0.0347 (10)0.0404 (11)0.0097 (8)−0.0055 (9)−0.0018 (8)
O10.047 (3)0.025 (2)0.030 (3)−0.001 (2)0.007 (2)0.005 (2)
O20.051 (3)0.021 (2)0.033 (3)−0.005 (2)0.005 (2)−0.002 (2)
O30.040 (3)0.031 (2)0.032 (3)0.004 (2)0.008 (2)0.007 (2)
O40.051 (3)0.030 (3)0.032 (3)0.008 (2)0.000 (2)−0.003 (2)
C10.043 (4)0.021 (3)0.043 (4)−0.001 (3)0.010 (3)0.008 (3)
C20.047 (4)0.026 (3)0.034 (4)−0.007 (3)0.002 (3)0.006 (3)
C30.052 (4)0.023 (3)0.042 (4)−0.007 (3)0.001 (4)0.000 (3)
C40.040 (4)0.025 (3)0.035 (4)−0.001 (3)0.001 (3)−0.002 (3)
C100.036 (3)0.022 (3)0.032 (4)0.006 (3)−0.003 (3)0.001 (3)
C110.025 (3)0.027 (3)0.035 (4)0.003 (2)0.008 (3)0.000 (3)
C120.033 (4)0.029 (3)0.031 (4)0.003 (3)0.001 (3)−0.003 (3)
C130.040 (4)0.020 (3)0.030 (4)0.008 (3)0.007 (3)−0.003 (3)
C140.038 (4)0.027 (3)0.038 (4)−0.004 (3)0.005 (3)0.004 (3)
C150.034 (4)0.037 (4)0.032 (4)0.003 (3)0.002 (3)−0.001 (3)
C160.042 (4)0.033 (4)0.038 (4)0.006 (3)0.010 (3)0.001 (3)
C200.030 (3)0.026 (3)0.031 (4)−0.002 (3)0.009 (3)−0.002 (3)
C210.037 (4)0.024 (3)0.030 (4)0.001 (3)0.001 (3)0.000 (3)
C220.035 (4)0.028 (3)0.033 (4)0.000 (3)−0.001 (3)0.001 (3)
C230.028 (3)0.029 (3)0.034 (4)0.003 (3)0.003 (3)−0.005 (3)
C240.057 (5)0.020 (3)0.035 (4)−0.005 (3)0.009 (4)−0.003 (3)
C250.051 (4)0.029 (4)0.031 (4)−0.003 (3)0.009 (3)0.004 (3)
C260.106 (8)0.030 (4)0.037 (5)0.024 (5)0.000 (5)−0.010 (3)
P1—O11.580 (5)C10—C151.366 (10)
P1—C101.798 (7)C10—C111.398 (9)
P1—S31.931 (3)C11—C121.383 (10)
P1—S12.117 (2)C11—H110.95
P2—O21.582 (5)C12—C131.395 (10)
P2—C201.794 (7)C12—H120.95
P2—S41.933 (3)C13—C141.393 (10)
P2—S22.091 (3)C14—C151.387 (10)
S1—S22.074 (3)C14—H140.95
O1—C11.477 (8)C15—H150.95
O2—C41.453 (8)C16—H16A0.98
O3—C131.357 (8)C16—H16B0.98
O3—C161.413 (9)C16—H16C0.98
O4—C231.364 (8)C20—C251.383 (10)
O4—C261.435 (9)C20—C211.389 (10)
C1—C21.501 (11)C21—C221.391 (10)
C1—H1A0.99C21—H210.95
C1—H1B0.99C22—C231.408 (10)
C2—C31.511 (11)C22—H220.95
C2—H2A0.99C23—C241.368 (10)
C2—H2B0.99C24—C251.388 (10)
C3—C41.539 (10)C24—H240.95
C3—H3A0.99C25—H250.95
C3—H3B0.99C26—H26A0.98
C4—H4A0.99C26—H26B0.98
C4—H4B0.99C26—H26C0.98
O1—P1—C10101.1 (3)C12—C11—C10120.3 (6)
O1—P1—S3118.4 (2)C12—C11—H11119.9
C10—P1—S3118.5 (2)C10—C11—H11119.9
O1—P1—S1108.6 (2)C11—C12—C13119.4 (6)
C10—P1—S1105.2 (2)C11—C12—H12120.3
S3—P1—S1104.22 (11)C13—C12—H12120.3
O2—P2—C20100.0 (3)O3—C13—C14124.9 (7)
O2—P2—S4119.4 (2)O3—C13—C12114.8 (6)
C20—P2—S4116.5 (2)C14—C13—C12120.3 (7)
O2—P2—S2108.2 (2)C15—C14—C13119.2 (7)
C20—P2—S2109.4 (2)C15—C14—H14120.4
S4—P2—S2103.04 (11)C13—C14—H14120.4
S2—S1—P1103.13 (10)C10—C15—C14121.1 (7)
S1—S2—P2105.87 (10)C10—C15—H15119.5
C1—O1—P1122.7 (5)C14—C15—H15119.5
C4—O2—P2121.7 (4)O3—C16—H16A109.5
C13—O3—C16118.3 (6)O3—C16—H16B109.5
C23—O4—C26115.8 (6)H16A—C16—H16B109.5
O1—C1—C2112.6 (6)O3—C16—H16C109.5
O1—C1—H1A109.1H16A—C16—H16C109.5
C2—C1—H1A109.1H16B—C16—H16C109.5
O1—C1—H1B109.1C25—C20—C21120.1 (7)
C2—C1—H1B109.1C25—C20—P2118.2 (6)
H1A—C1—H1B107.8C21—C20—P2121.7 (5)
C1—C2—C3115.8 (6)C20—C21—C22119.8 (6)
C1—C2—H2A108.3C20—C21—H21120.1
C3—C2—H2A108.3C22—C21—H21120.1
C1—C2—H2B108.3C21—C22—C23119.4 (6)
C3—C2—H2B108.3C21—C22—H22120.3
H2A—C2—H2B107.4C23—C22—H22120.3
C2—C3—C4115.5 (6)O4—C23—C24125.0 (6)
C2—C3—H3A108.4O4—C23—C22114.6 (6)
C4—C3—H3A108.4C24—C23—C22120.3 (6)
C2—C3—H3B108.4C23—C24—C25120.0 (6)
C4—C3—H3B108.4C23—C24—H24120
H3A—C3—H3B107.5C25—C24—H24120
O2—C4—C3104.8 (6)C20—C25—C24120.4 (7)
O2—C4—H4A110.8C20—C25—H25119.8
C3—C4—H4A110.8C24—C25—H25119.8
O2—C4—H4B110.8O4—C26—H26A109.5
C3—C4—H4B110.8O4—C26—H26B109.5
H4A—C4—H4B108.9H26A—C26—H26B109.5
C15—C10—C11119.8 (7)O4—C26—H26C109.5
C15—C10—P1118.9 (5)H26A—C26—H26C109.5
C11—C10—P1121.2 (5)H26B—C26—H26C109.5
C10—P1—O1—C1−156.0 (5)O3—C13—C14—C15−179.6 (6)
S3—P1—O1—C1−24.8 (6)C12—C13—C14—C15−0.7 (10)
S1—P1—O1—C193.6 (5)C11—C10—C15—C14−0.2 (10)
C20—P2—O2—C4−173.9 (5)P1—C10—C15—C14176.4 (5)
S4—P2—O2—C4−45.6 (6)C13—C14—C15—C100.2 (11)
S2—P2—O2—C471.7 (5)O2—P2—C20—C25163.4 (6)
P1—O1—C1—C2−95.9 (7)S4—P2—C20—C2533.1 (7)
O1—C1—C2—C3−71.3 (8)S2—P2—C20—C25−83.2 (6)
C1—C2—C3—C472.0 (9)O2—P2—C20—C21−13.4 (6)
P2—O2—C4—C3−168.1 (5)S4—P2—C20—C21−143.7 (5)
C2—C3—C4—O265.1 (8)S2—P2—C20—C21100.0 (6)
O1—P1—C10—C15161.1 (5)C25—C20—C21—C22−1.5 (11)
S3—P1—C10—C1529.9 (6)P2—C20—C21—C22175.3 (6)
S1—P1—C10—C15−86.0 (6)C20—C21—C22—C231.1 (11)
O1—P1—C10—C11−22.4 (6)C26—O4—C23—C24−2.2 (11)
S3—P1—C10—C11−153.5 (5)C26—O4—C23—C22177.7 (8)
S1—P1—C10—C1190.6 (5)C21—C22—C23—O4−179.7 (6)
C15—C10—C11—C120.8 (10)C21—C22—C23—C240.2 (11)
P1—C10—C11—C12−175.8 (5)O4—C23—C24—C25178.9 (7)
C10—C11—C12—C13−1.3 (10)C22—C23—C24—C25−1.0 (11)
C16—O3—C13—C14−7.2 (9)C21—C20—C25—C240.6 (12)
C16—O3—C13—C12173.8 (6)P2—C20—C25—C24−176.2 (6)
C11—C12—C13—O3−179.7 (6)C23—C24—C25—C200.6 (12)
C11—C12—C13—C141.3 (10)
D—H···AD—HH···AD···AD—H···A
C1—H1B···S30.992.813.3883 (2)118
C4—H4B···O10.992.483.1308 (2)123
C4—H4B···O4i0.992.563.2708 (2)128
C11—H11···O4i0.952.623.4951 (3)154
C24—H24···O3ii0.952.513.4240 (3)162
C16—H16A···Cgiii0.982.623.454 (8)143
  5 in total

1.  The C7-C10 cycloalkanes revisited.

Authors:  Kenneth B Wiberg
Journal:  J Org Chem       Date:  2003-11-28       Impact factor: 4.354

2.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

5.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  5 in total

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