| Literature DB >> 29850053 |
Rosario C Sausa1, Leah A Wingard2, Pablo E Guzmán2, Rose A Pesce-Rodriguez1, Jesse J Sabatini2, Peter Y Zavalij3.
Abstract
The mol-ecular structure of 5,5'-bis(-hydroxy-methyl)-3,3'-biisoxazole, C8H8N2O4 (1), is composed of two trans planar isoxazole rings [r.m.s deviation = 0.006 (1) Å], each connected with a methyl hydroxyl group. Similarly, the structure of 4,4',5,5'-tetrakis-(hydroxy-methyl)-3,3'-biisoxazole, C10H12N2O6 (2), is composed of two planar isoxazole rings [r.m.s. deviation = 0.002 (1) Å], but with four hydroxymethyl groups as substituents. Both mol-ecules sit on a center of inversion, thus Z' = 0.5. The crystal structures are stabilized by networks of O-H⋯N [for (1)] and O-H⋯O hydrogen-bonding inter-actions [for (2)], giving rise to corrugated supra-molecular planes. The isoxazole rings are packed in a slip-stacked fashion, with centroid-to-centroid distances of 4.0652 (1) Å for (1) (along the b-axis direction) and of 4.5379 (Å) for (2) (along the a-axis direction).Entities:
Keywords: FTIR; crystal structure; hydroxymethyl-biisoxazole
Year: 2018 PMID: 29850053 PMCID: PMC5956336 DOI: 10.1107/S2056989018000828
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Molecular conformation and atom-numbering scheme of compounds (1) and (2). Non-labeled atoms of both structures are generated by inversion (−x + 2, −y + 1, −z + 1). Non-hydrogen atoms are shown as 50% probability displacement ellipsoids.
Figure 2An overlay of the asymmetric units of compounds (1) and (2), depicted in red and green, respectively.
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2 | 0.849 (18) | 1.849 (18) | 2.6936 (11) | 172.8 (16) |
| O3—H3 | 0.792 (19) | 2.085 (19) | 2.7898 (11) | 148.3 (18) |
| O3—H3 | 0.792 (19) | 2.550 (19) | 3.0728 (12) | 125.0 (16) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Crystal packing of (1) viewed along the a-axis direction. Dashed lines represent O2—H2A⋯N1i hydrogen bonds; symmetry code: (i) x − , −y + , z − .
Figure 4Crystal packing of (2) viewed along the a-axis direction. Dashed lines represent O2—H2A⋯O3i and O3—H3A⋯O2ii hydrogen bonds; symmetry codes: (i) −x + 1, y + , −z + ; (ii) x + 1, −y + , z + .
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2 | 0.82 | 2.03 | 2.8461 (15) | 171 |
Symmetry code: (i) .
Figure 5Overlays of the asymmetric units of (1) and (3) (A) and (2) and (4) (B).
Figure 6FTIR spectra of the title compounds.
Experimental details
| ( | ( | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C8H8N2O4 | C10H12N2O6 |
|
| 196.16 | 256.22 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 150 | 150 |
|
| 7.7824 (3), 4.0652 (1), 13.2109 (5) | 4.5379 (4), 9.9195 (8), 12.0177 (9) |
| β (°) | 102.334 (4) | 99.9312 (11) |
|
| 408.31 (2) | 532.86 (8) |
|
| 2 | 2 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 0.13 | 0.13 |
| Crystal size (mm) | 0.35 × 0.25 × 0.05 | 0.49 × 0.20 × 0.11 |
| Data collection | ||
| Diffractometer | Rigaku Oxford DiffractionSuperNova, Dualflex, EosS2 | Bruker SMART APEXII CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.207, 1.000 | 0.904, 0.985 |
| No. of measured, independent and observed [ | 3474, 823, 754 | 7638, 1737, 1570 |
|
| 0.027 | 0.019 |
| (sin θ/λ)max (Å−1) | 0.624 | 0.730 |
| Refinement | ||
|
| 0.033, 0.086, 1.04 | 0.034, 0.072, 1.00 |
| No. of reflections | 823 | 1737 |
| No. of parameters | 66 | 106 |
| H-atom treatment | H-atom parameters constrained | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.28, −0.15 | 0.44, −0.22 |
Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), APEX2, XSHELL and SAINT (Bruker, 2010 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).
| C8H8N2O4 | |
| Monoclinic, | Mo |
| Cell parameters from 1980 reflections | |
| θ = 2.8–26.2° | |
| µ = 0.13 mm−1 | |
| β = 102.334 (4)° | |
| Block, colorless | |
| 0.35 × 0.25 × 0.05 mm |
| Rigaku Oxford DiffractionSuperNova, Dualflex, EosS2 diffractometer | 823 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 754 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.0945 pixels mm-1 | θmax = 26.3°, θmin = 2.8° |
| ω scans | |
| Absorption correction: multi-scan CrysAlisPro (Rigaku OD, 2015; Bourhis | |
| 3474 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.28 e Å−3 | |
| 823 reflections | Δρmin = −0.15 e Å−3 |
| 66 parameters | Extinction correction: SHELXL-2016/4 (Sheldrick 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.041 (8) |
| Primary atom site location: dual |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.64217 (17) | 0.3456 (3) | 0.39844 (9) | 0.0193 (3) | |
| C2 | 0.78918 (17) | 0.5023 (3) | 0.38810 (10) | 0.0207 (3) | |
| H2 | 0.808128 | 0.621413 | 0.331370 | 0.025* | |
| C3 | 0.90869 (16) | 0.4449 (3) | 0.48325 (9) | 0.0188 (3) | |
| C4 | 0.46651 (17) | 0.3002 (3) | 0.32830 (10) | 0.0230 (3) | |
| H4A | 0.453788 | 0.076229 | 0.302446 | 0.028* | |
| H4B | 0.373826 | 0.343734 | 0.365286 | 0.028* | |
| N1 | 0.83872 (14) | 0.2665 (3) | 0.54646 (8) | 0.0238 (3) | |
| O1 | 0.66636 (12) | 0.2010 (2) | 0.49285 (7) | 0.0240 (3) | |
| O2 | 0.45577 (14) | 0.5241 (3) | 0.24526 (7) | 0.0304 (3) | |
| H2A | 0.412548 | 0.431590 | 0.190584 | 0.046* |
| C1 | 0.0199 (7) | 0.0198 (7) | 0.0165 (6) | 0.0029 (5) | 0.0004 (5) | −0.0032 (5) |
| C2 | 0.0194 (7) | 0.0238 (7) | 0.0174 (6) | 0.0007 (5) | 0.0009 (5) | −0.0005 (5) |
| C3 | 0.0173 (7) | 0.0209 (7) | 0.0174 (6) | 0.0021 (5) | 0.0019 (5) | −0.0029 (5) |
| C4 | 0.0190 (7) | 0.0249 (7) | 0.0226 (7) | −0.0005 (5) | −0.0009 (5) | −0.0054 (5) |
| N1 | 0.0173 (6) | 0.0315 (7) | 0.0198 (6) | −0.0029 (5) | −0.0019 (4) | −0.0002 (5) |
| O1 | 0.0180 (5) | 0.0319 (6) | 0.0199 (5) | −0.0052 (4) | −0.0008 (4) | 0.0003 (4) |
| O2 | 0.0342 (6) | 0.0275 (6) | 0.0230 (5) | −0.0011 (4) | −0.0087 (4) | −0.0024 (4) |
| C1—C2 | 1.3419 (19) | C3—N1 | 1.3093 (17) |
| C1—C4 | 1.4901 (17) | C4—H4A | 0.9700 |
| C1—O1 | 1.3550 (15) | C4—H4B | 0.9700 |
| C2—H2 | 0.9300 | C4—O2 | 1.4142 (17) |
| C2—C3 | 1.4143 (18) | N1—O1 | 1.4021 (14) |
| C3—C3i | 1.465 (2) | O2—H2A | 0.8200 |
| C2—C1—C4 | 133.19 (12) | C1—C4—H4A | 110.3 |
| C2—C1—O1 | 110.24 (11) | C1—C4—H4B | 110.3 |
| O1—C1—C4 | 116.57 (11) | H4A—C4—H4B | 108.5 |
| C1—C2—H2 | 127.9 | O2—C4—C1 | 107.28 (11) |
| C1—C2—C3 | 104.14 (11) | O2—C4—H4A | 110.3 |
| C3—C2—H2 | 127.9 | O2—C4—H4B | 110.3 |
| C2—C3—C3i | 129.00 (15) | C3—N1—O1 | 105.45 (10) |
| N1—C3—C2 | 111.97 (11) | C1—O1—N1 | 108.21 (10) |
| N1—C3—C3i | 119.03 (14) | C4—O2—H2A | 109.5 |
| C1—C2—C3—C3i | 179.69 (17) | C3—N1—O1—C1 | 0.23 (14) |
| C1—C2—C3—N1 | −0.03 (15) | C4—C1—C2—C3 | −179.05 (14) |
| C2—C1—C4—O2 | −13.3 (2) | C4—C1—O1—N1 | 179.11 (11) |
| C2—C1—O1—N1 | −0.26 (14) | O1—C1—C2—C3 | 0.18 (14) |
| C2—C3—N1—O1 | −0.12 (15) | O1—C1—C4—O2 | 167.55 (11) |
| C3i—C3—N1—O1 | −179.87 (14) |
| H··· | ||||
| O2—H2 | 0.82 | 2.03 | 2.8461 (15) | 171 |
| C10H12N2O6 | |
| Monoclinic, | Mo |
| Cell parameters from 3988 reflections | |
| θ = 2.7–32.1° | |
| µ = 0.13 mm−1 | |
| β = 99.9312 (11)° | |
| Needle, colourless | |
| 0.49 × 0.20 × 0.11 mm |
| Bruker SMART APEXII CCD diffractometer | 1737 independent reflections |
| Radiation source: sealed tube | 1570 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.333 pixels mm-1 | θmax = 31.3°, θmin = 2.7° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | |
| 7638 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| All H-atom parameters refined | |
| 1737 reflections | (Δ/σ)max < 0.001 |
| 106 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.58044 (17) | 0.58291 (7) | 0.30718 (6) | 0.01981 (16) | |
| O2 | 0.23448 (16) | 0.42300 (8) | 0.13078 (6) | 0.01890 (15) | |
| H2A | 0.174 (4) | 0.5035 (18) | 0.1182 (14) | 0.039 (4)* | |
| O3 | 0.93528 (19) | 0.17777 (8) | 0.42532 (7) | 0.02252 (17) | |
| H3A | 1.037 (4) | 0.1801 (18) | 0.4858 (16) | 0.045 (5)* | |
| N1 | 0.7277 (2) | 0.60707 (9) | 0.41811 (7) | 0.02010 (18) | |
| C1 | 0.6765 (2) | 0.46292 (10) | 0.27170 (8) | 0.01576 (17) | |
| C2 | 0.8810 (2) | 0.40630 (9) | 0.35428 (8) | 0.01513 (17) | |
| C3 | 0.9048 (2) | 0.50244 (10) | 0.44419 (8) | 0.01585 (18) | |
| C4 | 0.5528 (2) | 0.42337 (10) | 0.15275 (8) | 0.01753 (18) | |
| H4A | 0.631 (3) | 0.4856 (14) | 0.1016 (12) | 0.022 (3)* | |
| H4B | 0.622 (3) | 0.3337 (14) | 0.1391 (11) | 0.021 (3)* | |
| C5 | 1.0376 (2) | 0.27405 (10) | 0.35134 (9) | 0.01875 (19) | |
| H5A | 1.255 (3) | 0.2866 (14) | 0.3717 (12) | 0.024 (3)* | |
| H5B | 0.992 (3) | 0.2362 (14) | 0.2760 (11) | 0.021 (3)* |
| O1 | 0.0240 (4) | 0.0166 (3) | 0.0163 (3) | 0.0036 (3) | −0.0036 (3) | −0.0010 (3) |
| O2 | 0.0163 (3) | 0.0169 (3) | 0.0216 (3) | −0.0003 (3) | −0.0019 (3) | −0.0014 (3) |
| O3 | 0.0302 (4) | 0.0154 (3) | 0.0187 (4) | −0.0019 (3) | −0.0050 (3) | 0.0026 (3) |
| N1 | 0.0253 (4) | 0.0171 (4) | 0.0153 (4) | 0.0022 (3) | −0.0038 (3) | −0.0019 (3) |
| C1 | 0.0171 (4) | 0.0143 (4) | 0.0154 (4) | −0.0012 (3) | 0.0015 (3) | −0.0003 (3) |
| C2 | 0.0167 (4) | 0.0136 (4) | 0.0148 (4) | −0.0008 (3) | 0.0017 (3) | 0.0001 (3) |
| C3 | 0.0183 (4) | 0.0139 (4) | 0.0145 (4) | −0.0012 (3) | 0.0003 (3) | 0.0001 (3) |
| C4 | 0.0171 (4) | 0.0199 (4) | 0.0147 (4) | −0.0007 (3) | 0.0001 (3) | −0.0006 (3) |
| C5 | 0.0219 (4) | 0.0161 (4) | 0.0176 (4) | 0.0030 (3) | 0.0015 (3) | −0.0006 (3) |
| O1—N1 | 1.4050 (11) | C3—C2 | 1.4312 (13) |
| O2—H2A | 0.849 (18) | C3—C3i | 1.4657 (18) |
| O2—C4 | 1.4229 (12) | C4—C1 | 1.4952 (13) |
| O3—H3A | 0.792 (19) | C4—H4A | 0.980 (14) |
| N1—C3 | 1.3171 (12) | C4—H4B | 0.966 (14) |
| C1—O1 | 1.3612 (12) | C5—O3 | 1.4354 (13) |
| C1—C2 | 1.3577 (13) | C5—H5A | 0.982 (14) |
| C2—C5 | 1.4953 (13) | C5—H5B | 0.969 (14) |
| C1—O1—N1 | 108.71 (7) | O2—C4—C1 | 112.33 (8) |
| C4—O2—H2A | 108.4 (11) | O2—C4—H4A | 110.6 (8) |
| C5—O3—H3A | 110.4 (13) | O2—C4—H4B | 108.3 (8) |
| C3—N1—O1 | 105.20 (8) | C1—C4—H4A | 108.5 (8) |
| O1—C1—C4 | 116.17 (8) | C1—C4—H4B | 108.9 (8) |
| C2—C1—O1 | 110.38 (8) | H4A—C4—H4B | 108.1 (11) |
| C2—C1—C4 | 133.38 (9) | O3—C5—C2 | 111.30 (8) |
| C1—C2—C3 | 103.26 (8) | O3—C5—H5A | 110.3 (8) |
| C1—C2—C5 | 127.83 (9) | O3—C5—H5B | 106.3 (8) |
| C3—C2—C5 | 128.91 (9) | C2—C5—H5A | 110.1 (8) |
| N1—C3—C2 | 112.45 (8) | C2—C5—H5B | 109.7 (8) |
| N1—C3—C3i | 118.88 (11) | H5A—C5—H5B | 109.0 (11) |
| C2—C3—C3i | 128.67 (11) | ||
| O1—N1—C3—C2 | −0.53 (11) | C1—C2—C5—O3 | −110.02 (11) |
| O1—N1—C3—C3i | 179.26 (10) | C2—C1—O1—N1 | 0.05 (11) |
| O1—C1—C2—C3 | −0.35 (10) | C3—C2—C5—O3 | 68.82 (13) |
| O1—C1—C2—C5 | 178.72 (9) | C3i—C3—C2—C1 | −179.21 (12) |
| O2—C4—C1—O1 | −54.93 (11) | C3i—C3—C2—C5 | 1.74 (19) |
| O2—C4—C1—C2 | 128.39 (11) | C4—C1—O1—N1 | −177.38 (8) |
| N1—C3—C2—C1 | 0.56 (11) | C4—C1—C2—C3 | 176.48 (10) |
| N1—C3—C2—C5 | −178.49 (10) | C4—C1—C2—C5 | −4.46 (18) |
| C1—O1—N1—C3 | 0.30 (10) |
| H··· | ||||
| O2—H2 | 0.849 (18) | 1.849 (18) | 2.6936 (11) | 172.8 (16) |
| O3—H3 | 0.792 (19) | 2.085 (19) | 2.7898 (11) | 148.3 (18) |
| O3—H3 | 0.792 (19) | 2.550 (19) | 3.0728 (12) | 125.0 (16) |