| Literature DB >> 29850048 |
Abstract
In the title compound, [Zn(C4H11N2)2(S2O3)2]·2H2O, twoEntities:
Keywords: crystal structure; hydrogen bonding; piperazine; zinc thiosulfate
Year: 2018 PMID: 29850048 PMCID: PMC5956331 DOI: 10.1107/S2056989018000555
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of the title compound, with atom labelling and showing 50% probability displacement ellipsoids.
Figure 2A view along the a axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 ▸).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2i | 0.83 (2) | 2.25 (2) | 3.041 (2) | 160 (2) |
| N2—H2 | 0.95 (3) | 1.80 (3) | 2.730 (2) | 166 (2) |
| N2—H2 | 0.93 (2) | 1.89 (2) | 2.811 (3) | 170 (2) |
| N3—H3⋯O3i | 0.84 (2) | 2.03 (2) | 2.853 (2) | 166 (2) |
| N4—H4 | 0.87 (2) | 2.09 (2) | 2.892 (2) | 154 (2) |
| N4—H4 | 0.94 (2) | 1.84 (2) | 2.763 (2) | 169 (2) |
| O10—H10 | 0.85 (3) | 1.94 (4) | 2.780 (2) | 175 (3) |
| O10—H10 | 0.76 (3) | 2.02 (3) | 2.777 (2) | 176 (4) |
| O20—H20 | 0.82 (3) | 2.02 (3) | 2.804 (2) | 163 (3) |
| O20—H20 | 0.74 (3) | 2.17 (3) | 2.866 (2) | 158 (3) |
| C3—H3 | 0.97 | 2.45 | 3.221 (2) | 136 |
| C4—H4 | 0.97 | 2.49 | 3.175 (3) | 128 |
| C4—H4 | 0.97 | 2.54 | 3.463 (2) | 159 |
| C5—H5 | 0.97 | 2.86 | 3.453 (2) | 120 |
| C8—H8 | 0.97 | 2.50 | 3.318 (2) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Experimental details
| Crystal data | |
| Chemical formula | [Zn(C4H11N2)2(S2O3)2]·2H2O |
|
| 499.94 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 8.7631 (1), 10.5623 (2), 11.6072 (2) |
| α, β, γ (°) | 113.736 (1), 98.761 (1), 91.472 (1) |
|
| 967.49 (3) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.74 |
| Crystal size (mm) | 0.22 × 0.18 × 0.16 |
| Data collection | |
| Diffractometer | Bruker SMART APEX CCD area detector |
| Absorption correction | Multi-scan ( |
|
| 0.700, 0.768 |
| No. of measured, independent and observed [ | 19938, 7607, 5927 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.782 |
| Refinement | |
|
| 0.032, 0.079, 1.01 |
| No. of reflections | 7607 |
| No. of parameters | 266 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.47, −0.36 |
Computer programs: SMART and SAINT (Bruker, 2000 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2016/6 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| [Zn(C4H11N2)2(S2O3)2]·2H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3790 reflections | |
| θ = 2.0–26.0° | |
| α = 113.736 (1)° | µ = 1.74 mm−1 |
| β = 98.761 (1)° | |
| γ = 91.472 (1)° | Block, colorless |
| 0.22 × 0.18 × 0.16 mm |
| Bruker SMART APEX CCD area detector diffractometer | 7607 independent reflections |
| Radiation source: fine-focus sealed tube | 5927 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 33.7°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Bruker, 2000) | |
| 19938 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 7607 reflections | (Δ/σ)max < 0.001 |
| 266 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Zn1 | 0.36403 (2) | 0.36678 (2) | 0.17364 (2) | 0.02307 (5) | |
| S1 | 0.19769 (4) | 0.23705 (4) | −0.01347 (4) | 0.02921 (8) | |
| S2 | 0.28149 (4) | 0.31755 (4) | −0.12806 (4) | 0.02866 (8) | |
| S3 | 0.31486 (6) | 0.34577 (4) | 0.35739 (4) | 0.03543 (10) | |
| S4 | 0.27051 (4) | 0.13632 (4) | 0.29154 (4) | 0.02567 (8) | |
| O1 | 0.22237 (19) | 0.21735 (14) | −0.25891 (12) | 0.0508 (4) | |
| O2 | 0.22392 (19) | 0.45077 (14) | −0.10572 (15) | 0.0541 (4) | |
| O3 | 0.44978 (15) | 0.32601 (19) | −0.09909 (15) | 0.0612 (4) | |
| O4 | 0.40860 (15) | 0.06807 (14) | 0.25701 (14) | 0.0486 (3) | |
| O5 | 0.2234 (2) | 0.11500 (13) | 0.39847 (14) | 0.0544 (4) | |
| O6 | 0.14635 (14) | 0.09045 (13) | 0.18082 (13) | 0.0435 (3) | |
| N1 | 0.59630 (14) | 0.33597 (13) | 0.16071 (13) | 0.0261 (2) | |
| H1 | 0.627 (2) | 0.3885 (19) | 0.1297 (18) | 0.033 (5)* | |
| N2 | 0.86568 (17) | 0.19550 (17) | 0.20334 (16) | 0.0381 (3) | |
| H2AN | 0.968 (3) | 0.172 (2) | 0.194 (2) | 0.053 (6)* | |
| H2BN | 0.831 (3) | 0.149 (2) | 0.249 (2) | 0.058 (7)* | |
| N3 | 0.34859 (14) | 0.57724 (12) | 0.22385 (12) | 0.0225 (2) | |
| H3 | 0.396 (2) | 0.5979 (17) | 0.1754 (17) | 0.024 (4)* | |
| N4 | 0.24360 (17) | 0.84404 (13) | 0.37115 (13) | 0.0298 (3) | |
| H4AN | 0.186 (2) | 0.8219 (19) | 0.4161 (19) | 0.037 (5)* | |
| H4BN | 0.229 (2) | 0.937 (2) | 0.3879 (19) | 0.043 (5)* | |
| C1 | 0.69716 (19) | 0.37986 (18) | 0.28807 (16) | 0.0381 (4) | |
| H1A | 0.654430 | 0.334114 | 0.335305 | 0.046* | |
| H1B | 0.696156 | 0.479233 | 0.335289 | 0.046* | |
| C2 | 0.8636 (2) | 0.34663 (19) | 0.2805 (2) | 0.0454 (5) | |
| H2A | 0.911324 | 0.399270 | 0.241316 | 0.055* | |
| H2B | 0.922320 | 0.372326 | 0.365901 | 0.055* | |
| C3 | 0.7752 (2) | 0.1542 (2) | 0.07222 (18) | 0.0421 (4) | |
| H3A | 0.777441 | 0.055408 | 0.022780 | 0.051* | |
| H3B | 0.821264 | 0.203770 | 0.029594 | 0.051* | |
| C4 | 0.60942 (19) | 0.18742 (16) | 0.07979 (15) | 0.0315 (3) | |
| H4A | 0.552976 | 0.164170 | −0.005869 | 0.038* | |
| H4B | 0.561198 | 0.129930 | 0.114233 | 0.038* | |
| C5 | 0.4203 (2) | 0.66344 (15) | 0.35818 (15) | 0.0327 (3) | |
| H5A | 0.528902 | 0.647499 | 0.370824 | 0.039* | |
| H5B | 0.370312 | 0.634514 | 0.413833 | 0.039* | |
| C6 | 0.40821 (19) | 0.81761 (15) | 0.39612 (16) | 0.0330 (3) | |
| H6A | 0.450934 | 0.868622 | 0.486215 | 0.040* | |
| H6B | 0.467790 | 0.849836 | 0.347563 | 0.040* | |
| C7 | 0.17408 (19) | 0.76190 (16) | 0.23399 (16) | 0.0333 (3) | |
| H7A | 0.227849 | 0.791358 | 0.180529 | 0.040* | |
| H7B | 0.065948 | 0.778454 | 0.219288 | 0.040* | |
| C8 | 0.18624 (17) | 0.60873 (15) | 0.19857 (16) | 0.0308 (3) | |
| H8A | 0.124751 | 0.578258 | 0.247102 | 0.037* | |
| H8B | 0.143694 | 0.557112 | 0.108512 | 0.037* | |
| O10 | 0.72416 (18) | 0.05969 (17) | 0.32966 (15) | 0.0460 (3) | |
| H10A | 0.629 (4) | 0.060 (3) | 0.303 (3) | 0.098 (11)* | |
| H10B | 0.742 (3) | −0.015 (3) | 0.313 (3) | 0.074 (10)* | |
| O20 | −0.01440 (19) | 0.7318 (2) | 0.44092 (18) | 0.0557 (4) | |
| H20A | −0.082 (4) | 0.729 (3) | 0.383 (3) | 0.092 (11)* | |
| H20B | −0.048 (3) | 0.776 (3) | 0.497 (3) | 0.070 (9)* |
| Zn1 | 0.02461 (8) | 0.02117 (8) | 0.02345 (8) | 0.00381 (6) | 0.00452 (6) | 0.00900 (6) |
| S1 | 0.02902 (18) | 0.03198 (19) | 0.02573 (17) | −0.00689 (14) | 0.00212 (13) | 0.01250 (15) |
| S2 | 0.02756 (17) | 0.0354 (2) | 0.02670 (18) | 0.00130 (14) | 0.00454 (13) | 0.01668 (15) |
| S3 | 0.0560 (3) | 0.02537 (18) | 0.02544 (18) | −0.00262 (17) | 0.01059 (17) | 0.01015 (15) |
| S4 | 0.02671 (16) | 0.02414 (17) | 0.03090 (18) | 0.00813 (13) | 0.01197 (13) | 0.01342 (14) |
| O1 | 0.0746 (10) | 0.0502 (8) | 0.0237 (6) | 0.0060 (7) | 0.0030 (6) | 0.0132 (5) |
| O2 | 0.0744 (10) | 0.0403 (7) | 0.0630 (9) | 0.0151 (7) | 0.0259 (8) | 0.0316 (7) |
| O3 | 0.0291 (6) | 0.1148 (13) | 0.0692 (10) | −0.0021 (7) | 0.0074 (6) | 0.0689 (10) |
| O4 | 0.0356 (7) | 0.0524 (8) | 0.0618 (9) | 0.0251 (6) | 0.0179 (6) | 0.0229 (7) |
| O5 | 0.0985 (12) | 0.0319 (6) | 0.0513 (8) | 0.0170 (7) | 0.0449 (8) | 0.0242 (6) |
| O6 | 0.0308 (6) | 0.0364 (7) | 0.0466 (7) | 0.0042 (5) | 0.0010 (5) | 0.0021 (5) |
| N1 | 0.0255 (6) | 0.0260 (6) | 0.0290 (6) | 0.0060 (5) | 0.0052 (5) | 0.0132 (5) |
| N2 | 0.0270 (7) | 0.0479 (9) | 0.0476 (9) | 0.0152 (6) | 0.0120 (6) | 0.0253 (7) |
| N3 | 0.0239 (5) | 0.0217 (5) | 0.0234 (6) | 0.0036 (4) | 0.0068 (4) | 0.0097 (5) |
| N4 | 0.0379 (7) | 0.0219 (6) | 0.0331 (7) | 0.0078 (5) | 0.0141 (6) | 0.0119 (5) |
| C1 | 0.0325 (8) | 0.0364 (9) | 0.0334 (8) | 0.0085 (7) | −0.0011 (6) | 0.0040 (7) |
| C2 | 0.0257 (8) | 0.0450 (10) | 0.0570 (12) | 0.0036 (7) | −0.0024 (8) | 0.0156 (9) |
| C3 | 0.0425 (9) | 0.0500 (11) | 0.0373 (9) | 0.0219 (8) | 0.0164 (7) | 0.0172 (8) |
| C4 | 0.0335 (8) | 0.0311 (8) | 0.0273 (7) | 0.0101 (6) | 0.0061 (6) | 0.0087 (6) |
| C5 | 0.0377 (8) | 0.0255 (7) | 0.0294 (7) | 0.0066 (6) | −0.0024 (6) | 0.0085 (6) |
| C6 | 0.0351 (8) | 0.0231 (7) | 0.0342 (8) | 0.0025 (6) | 0.0018 (6) | 0.0065 (6) |
| C7 | 0.0349 (8) | 0.0307 (8) | 0.0336 (8) | 0.0105 (6) | 0.0027 (6) | 0.0133 (6) |
| C8 | 0.0248 (7) | 0.0269 (7) | 0.0361 (8) | 0.0044 (5) | 0.0028 (6) | 0.0091 (6) |
| O10 | 0.0428 (8) | 0.0457 (8) | 0.0492 (8) | 0.0068 (6) | 0.0067 (6) | 0.0197 (7) |
| O20 | 0.0445 (8) | 0.0857 (12) | 0.0441 (9) | 0.0215 (8) | 0.0168 (7) | 0.0300 (9) |
| Zn1—N3 | 2.0727 (12) | N4—H4BN | 0.93 (2) |
| Zn1—N1 | 2.0879 (13) | C1—C2 | 1.516 (2) |
| Zn1—S1 | 2.2927 (4) | C1—H1A | 0.9700 |
| Zn1—S3 | 2.3324 (4) | C1—H1B | 0.9700 |
| S1—S2 | 2.0511 (5) | C2—H2A | 0.9700 |
| S2—O2 | 1.4437 (14) | C2—H2B | 0.9700 |
| S2—O3 | 1.4539 (14) | C3—C4 | 1.510 (2) |
| S2—O1 | 1.4606 (13) | C3—H3A | 0.9700 |
| S3—S4 | 2.0332 (5) | C3—H3B | 0.9700 |
| S4—O4 | 1.4507 (12) | C4—H4A | 0.9700 |
| S4—O6 | 1.4546 (13) | C4—H4B | 0.9700 |
| S4—O5 | 1.4623 (13) | C5—C6 | 1.518 (2) |
| N1—C1 | 1.487 (2) | C5—H5A | 0.9700 |
| N1—C4 | 1.4876 (19) | C5—H5B | 0.9700 |
| N1—H1 | 0.83 (2) | C6—H6A | 0.9700 |
| N2—C2 | 1.485 (2) | C6—H6B | 0.9700 |
| N2—C3 | 1.489 (2) | C7—C8 | 1.511 (2) |
| N2—H2AN | 0.95 (2) | C7—H7A | 0.9700 |
| N2—H2BN | 0.93 (2) | C7—H7B | 0.9700 |
| N3—C5 | 1.4779 (19) | C8—H8A | 0.9700 |
| N3—C8 | 1.4820 (18) | C8—H8B | 0.9700 |
| N3—H3 | 0.837 (18) | O10—H10A | 0.85 (3) |
| N4—C6 | 1.484 (2) | O10—H10B | 0.76 (3) |
| N4—C7 | 1.491 (2) | O20—H20A | 0.81 (3) |
| N4—H4AN | 0.87 (2) | O20—H20B | 0.74 (3) |
| N3—Zn1—N1 | 105.78 (5) | N1—C1—H1B | 108.9 |
| N3—Zn1—S1 | 110.79 (3) | C2—C1—H1B | 108.9 |
| N1—Zn1—S1 | 112.90 (4) | H1A—C1—H1B | 107.7 |
| N3—Zn1—S3 | 101.24 (4) | N2—C2—C1 | 109.22 (14) |
| N1—Zn1—S3 | 108.21 (4) | N2—C2—H2A | 109.8 |
| S1—Zn1—S3 | 116.788 (16) | C1—C2—H2A | 109.8 |
| S2—S1—Zn1 | 98.167 (18) | N2—C2—H2B | 109.8 |
| O2—S2—O3 | 112.85 (10) | C1—C2—H2B | 109.8 |
| O2—S2—O1 | 110.61 (9) | H2A—C2—H2B | 108.3 |
| O3—S2—O1 | 111.04 (10) | N2—C3—C4 | 109.77 (14) |
| O2—S2—S1 | 109.71 (6) | N2—C3—H3A | 109.7 |
| O3—S2—S1 | 107.00 (6) | C4—C3—H3A | 109.7 |
| O1—S2—S1 | 105.27 (6) | N2—C3—H3B | 109.7 |
| S4—S3—Zn1 | 101.05 (2) | C4—C3—H3B | 109.7 |
| O4—S4—O6 | 110.47 (8) | H3A—C3—H3B | 108.2 |
| O4—S4—O5 | 111.17 (9) | N1—C4—C3 | 113.09 (14) |
| O6—S4—O5 | 112.02 (9) | N1—C4—H4A | 109.0 |
| O4—S4—S3 | 110.45 (6) | C3—C4—H4A | 109.0 |
| O6—S4—S3 | 108.00 (6) | N1—C4—H4B | 109.0 |
| O5—S4—S3 | 104.53 (5) | C3—C4—H4B | 109.0 |
| C1—N1—C4 | 110.39 (12) | H4A—C4—H4B | 107.8 |
| C1—N1—Zn1 | 112.60 (10) | N3—C5—C6 | 113.06 (12) |
| C4—N1—Zn1 | 109.65 (9) | N3—C5—H5A | 109.0 |
| C1—N1—H1 | 105.4 (13) | C6—C5—H5A | 109.0 |
| C4—N1—H1 | 112.1 (13) | N3—C5—H5B | 109.0 |
| Zn1—N1—H1 | 106.6 (13) | C6—C5—H5B | 109.0 |
| C2—N2—C3 | 110.50 (14) | H5A—C5—H5B | 107.8 |
| C2—N2—H2AN | 111.5 (13) | N4—C6—C5 | 110.10 (13) |
| C3—N2—H2AN | 107.0 (14) | N4—C6—H6A | 109.6 |
| C2—N2—H2BN | 107.5 (14) | C5—C6—H6A | 109.6 |
| C3—N2—H2BN | 114.4 (14) | N4—C6—H6B | 109.6 |
| H2AN—N2—H2BN | 106.1 (19) | C5—C6—H6B | 109.6 |
| C5—N3—C8 | 110.20 (12) | H6A—C6—H6B | 108.2 |
| C5—N3—Zn1 | 112.71 (9) | N4—C7—C8 | 110.19 (13) |
| C8—N3—Zn1 | 111.95 (9) | N4—C7—H7A | 109.6 |
| C5—N3—H3 | 109.2 (12) | C8—C7—H7A | 109.6 |
| C8—N3—H3 | 106.3 (12) | N4—C7—H7B | 109.6 |
| Zn1—N3—H3 | 106.2 (12) | C8—C7—H7B | 109.6 |
| C6—N4—C7 | 110.40 (12) | H7A—C7—H7B | 108.1 |
| C6—N4—H4AN | 113.4 (13) | N3—C8—C7 | 112.29 (12) |
| C7—N4—H4AN | 107.0 (13) | N3—C8—H8A | 109.1 |
| C6—N4—H4BN | 114.3 (13) | C7—C8—H8A | 109.1 |
| C7—N4—H4BN | 106.1 (13) | N3—C8—H8B | 109.1 |
| H4AN—N4—H4BN | 105.1 (17) | C7—C8—H8B | 109.1 |
| N1—C1—C2 | 113.43 (15) | H8A—C8—H8B | 107.9 |
| N1—C1—H1A | 108.9 | H10A—O10—H10B | 109 (3) |
| C2—C1—H1A | 108.9 | H20A—O20—H20B | 100 (3) |
| C4—N1—C1—C2 | 52.0 (2) | C8—N3—C5—C6 | −53.62 (19) |
| Zn1—N1—C1—C2 | 174.88 (12) | Zn1—N3—C5—C6 | −179.47 (11) |
| C3—N2—C2—C1 | 59.1 (2) | C7—N4—C6—C5 | −57.01 (18) |
| N1—C1—C2—N2 | −56.1 (2) | N3—C5—C6—N4 | 55.66 (19) |
| C2—N2—C3—C4 | −59.4 (2) | C6—N4—C7—C8 | 58.03 (18) |
| C1—N1—C4—C3 | −51.76 (19) | C5—N3—C8—C7 | 54.16 (18) |
| Zn1—N1—C4—C3 | −176.37 (11) | Zn1—N3—C8—C7 | −179.56 (11) |
| N2—C3—C4—N1 | 56.0 (2) | N4—C7—C8—N3 | −56.96 (19) |
| H··· | ||||
| N1—H1···O2i | 0.83 (2) | 2.25 (2) | 3.041 (2) | 160 (2) |
| N2—H2 | 0.95 (3) | 1.80 (3) | 2.730 (2) | 166 (2) |
| N2—H2 | 0.93 (2) | 1.89 (2) | 2.811 (3) | 170 (2) |
| N3—H3···O3i | 0.84 (2) | 2.03 (2) | 2.853 (2) | 166 (2) |
| N4—H4 | 0.87 (2) | 2.09 (2) | 2.892 (2) | 154 (2) |
| N4—H4 | 0.94 (2) | 1.84 (2) | 2.763 (2) | 169 (2) |
| O10—H10 | 0.85 (3) | 1.94 (4) | 2.780 (2) | 175 (3) |
| O10—H10 | 0.76 (3) | 2.02 (3) | 2.777 (2) | 176 (4) |
| O20—H20 | 0.82 (3) | 2.02 (3) | 2.804 (2) | 163 (3) |
| O20—H20 | 0.74 (3) | 2.17 (3) | 2.866 (2) | 158 (3) |
| C3—H3 | 0.97 | 2.45 | 3.221 (2) | 136 |
| C4—H4 | 0.97 | 2.49 | 3.175 (3) | 128 |
| C4—H4 | 0.97 | 2.54 | 3.463 (2) | 159 |
| C5—H5 | 0.97 | 2.86 | 3.453 (2) | 120 |
| C8—H8 | 0.97 | 2.50 | 3.318 (2) | 142 |